CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX74700
CDY07438
CDY18962
CDY27400
CDY37020
CDY39298

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	CDX74700	AT2G44950.1	21798944
AT1G75990.1	CDY18962	AT2G44950.1	21798944
AT1G75990.1	CDY27400	AT2G44950.1	21798944
AT1G75990.1	CDY37020	AT2G44950.1	21798944
AT1G75990.1	CDY07438	AT5G45010.1	19843313
AT1G75990.1	CDY39298	AT5G45010.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87648	Canola	extracellular	95.93	97.72
AT1G75990.1	Thale cress	cytosol	90.02	90.76
CDY31902	Canola	cytosol	13.24	90.28
CDX83743	Canola	cytosol	7.13	89.74
KRH61001	Soybean	nucleus	81.26	81.93
CDY54330	Canola	cytosol, nucleus, plastid	58.86	81.87
KRH51666	Soybean	nucleus	81.06	81.72
VIT_18s0001g01120.t01	Wine grape	nucleus	79.43	80.08
KRH17475	Soybean	nucleus	78.82	78.98
KRH05990	Soybean	cytosol, nucleus, plastid	77.6	77.76
CDY00383	Canola	extracellular	16.29	69.57
CDY31901	Canola	cytosol	33.2	64.94
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	61.91	62.81
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	62.12	62.76
CDX78831	Canola	extracellular	12.63	59.62
CDX83742	Canola	cytosol	6.52	56.14
CDY22923	Canola	extracellular	21.59	48.4
CDY54331	Canola	cytosol	7.94	45.88
CDY01387	Canola	cytosol	19.14	43.93
CDY47438	Canola	plastid	20.57	34.95

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	GO:A0A078C8T1	EnsemblPlants:CDX73215	ProteinID:CDX73215
ProteinID:CDX73215.1	ncoils:Coil	GO:GO:0000502	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0019538	GO:GO:0030234
GO:GO:0042176	EnsemblPlantsGene:GSBRNA2T00103709001	InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375
PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI0004EDD53B	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

BnaC06g36630D

Coordinates

chrLK031797:-:2732102..2734601

Molecular Weight (calculated)

55980.9 Da

IEP (calculated)

8.420

GRAVY (calculated)

-0.369

Length

491 amino acids

Sequence
(BLAST)

001: MTTTTQDVEM KDNNQTPPQS IVSATTSILQ HLKEIAALID TGSYTKEVRR VARAVRLTVG IRQKLTASVV SSFLDFALGH GSEAHARLSS FVPKSDEHDM
101: EVDTASSIPL AASKHVPVEL EVYCYFIVLL FLIDQKKYNE AKACSSASIA RLKSLNKRTI DVIASRLYFY YSLSYEMTGD LAEIRGTLLS LHHSATLRHD
201: ELGQETLLNL LLRNYLHYNL YDQAEKLRSK APRFEAHSNQ QFCRYLFYLG KIRTIQLEYT DAKESLLQAA RKAPVAALGF RVQCNKWAIL VRLLLGEIPE
301: RSIFMQKGME KALRPYFELT NAVRIGDLEL FRNVQEKFAK TFSEDRTHNL IVRLRHNVIR TGLRNISISY SRISLTDVAQ KLRLNSANPV ADAESIVAKA
401: IRDGAIDATI DHKNGYMVSK ETGDIYSTNE PQNAFNSRIA FCLNMHNEAV RALRFPPNTH REKESEEKRR EMKQQEEELA KYMAEEDDDD F

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.