Factsheet for VIT_18s0001g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g01530.t01
VIT_15s0021g02140.t01
VIT_17s0000g08090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20200.1	VIT_14s0066g01530.t01	AT5G45010.1	19843313
AT1G20200.1	VIT_17s0000g08090.t01	AT5G45010.1	19843313
AT1G75990.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT1G75990.1	VIT_14s0066g01530.t01	AT5G45010.1	19843313
AT1G75990.1	VIT_17s0000g08090.t01	AT5G45010.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31902	Canola	cytosol	12.94	87.5
KRH61001	Soybean	nucleus	86.86	86.86
KRH51666	Soybean	nucleus	86.65	86.65
VIT_03s0038g02590.t01	Wine grape	plastid	86.04	86.04
CDX83743	Canola	cytosol	6.78	84.62
KRH17475	Soybean	nucleus	84.6	84.08
AT1G20200.1	Thale cress	cytosol	82.55	82.38
AT1G75990.1	Thale cress	cytosol	81.11	81.11
KRH05990	Soybean	cytosol, nucleus, plastid	81.52	81.02
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	81.11	80.94
Bra015799.1-P	Field mustard	plastid	79.26	80.08
CDX87648	Canola	extracellular	79.06	79.88
Os09t0541900-01	Rice	cytosol, nucleus, plastid	79.67	79.67
TraesCS4B01G265800.1	Wheat	plastid	79.67	79.51
TraesCS4B01G265700.1	Wheat	plastid	79.67	79.51
TraesCS4D01G265700.1	Wheat	unclear	79.67	79.51
CDX73215	Canola	cytosol, nucleus, plastid	80.08	79.43
Os08t0550100-01	Rice	plasma membrane	79.06	79.22
TraesCS4A01G044600.1	Wheat	golgi	79.67	79.18
HORVU4Hr1G071480.8	Barley	plastid	79.88	78.59
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	79.26	77.82
EES14113	Sorghum	cytosol, nucleus, plastid	79.26	77.82
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	79.06	77.62
TraesCS5A01G335200.1	Wheat	golgi	78.85	77.42
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	79.67	76.38
CDY54330	Canola	cytosol, nucleus, plastid	54.62	75.35
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	80.08	74.71
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	82.14	72.73
GSMUA_Achr8P13090_001	Banana	cytosol	35.93	72.31
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	40.04	71.96
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	64.89	65.29
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	65.09	65.23
CDY00383	Canola	extracellular	14.78	62.61
CDY31901	Canola	cytosol	31.83	61.75
CDX78831	Canola	extracellular	11.29	52.88
CDX83742	Canola	cytosol	6.16	52.63
HORVU7Hr1G080070.2	Barley	cytosol	10.27	52.08
CDY22923	Canola	extracellular	20.12	44.75
CDY54331	Canola	cytosol	7.39	42.35
CDY47438	Canola	plastid	18.28	30.8

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100255691	wikigene:100255691	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	ProteinID:CBI18933
ProteinID:CBI18933.3	ncoils:Coil	UniProt:E0CQX9	EMBL:FN595227	GO:GO:0000502	GO:GO:0003674
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0042176
GO:GO:0050790	InterPro:IPR000717	EntrezGene:LOC100255691	wikigene:LOC100255691	InterPro:PCI_dom	PFAM:PF01399
PFAM:PF08375	PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	TIGR:TC58005	TIGR:TC62225	UniParc:UPI00015C7E8E	ArrayExpress:VIT_18s0001g01120	EnsemblPlantsGene:VIT_18s0001g01120
EnsemblPlants:VIT_18s0001g01120.t01	unigene:Vvi.11580	InterPro:WH_DNA-bd_sf	RefSeq:XP_002285893	RefSeq:XP_002285893.1	RefSeq:XP_019072246.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:1772271..1777402

Molecular Weight (calculated)

55657.9 Da

IEP (calculated)

8.942

GRAVY (calculated)

-0.341

Length

487 amino acids

Sequence
(BLAST)

001: MTQDVEMKDR TAPSNSVSST GPSTLHQLKE IASLIETGSY TKEVRRIVRA IRLTMALRRK LKVPVLSAFL DFALVPVSEA HSRLSAYLPK EDEHDMEVDT
101: ATSADQAPVK HLVPELEIYC YLLVLVFLID QKKYNEAKAC SSASIVRLKN LNRRTVDVLA SKLYLYYSYS YELTGHLAEI RGNLLGLHRI TTLRHDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP AAARGFRIQC NKWAIIVRLL LGEIPERTVF
301: MQKGMEKALR PYFELTNAVR IGDLELFRSV AEKFAGTFST DRIHNLIVRL RHNVIRTGLR NISISYSRIS LADIASKLRL DSANPVADAE SIVAKAIHDG
401: AIDATLDHSN GWMVSKETGD IYSTIEPQIA FNSRITFCLN MHNEAVRALR YPPNTQKEKE SAEKRRERQQ QEQELAKHIA EEEDDDF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.