Factsheet for GSMUA_Achr5P18970_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol, golgi, plasma membrane, vacuole, endoplasmic reticulum, plastid

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P01610_001
GSMUA_Achr4P26960_001
GSMUA_Achr4P26970_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	GSMUA_Achr1P01610_001	AT2G44950.1	21798944
AT1G75990.1	GSMUA_Achr4P26960_001	AT2G44950.1	21798944
AT1G75990.1	GSMUA_Achr4P26970_001	AT2G44950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	81.45	91.8
GSMUA_Achr8P13090_001	Banana	cytosol	37.64	85.54
VIT_03s0038g02590.t01	Wine grape	plastid	74.55	84.19
KRH61001	Soybean	nucleus	73.82	83.37
KRH51666	Soybean	nucleus	73.82	83.37
VIT_18s0001g01120.t01	Wine grape	nucleus	72.73	82.14
PGSC0003DMT400015774	Potato	nucleus	72.73	80.97
Os09t0541900-01	Rice	cytosol, nucleus, plastid	70.73	79.88
Os08t0550100-01	Rice	plasma membrane	70.55	79.84
TraesCS4B01G265800.1	Wheat	plastid	70.55	79.51
TraesCS4B01G265700.1	Wheat	plastid	70.55	79.51
TraesCS4D01G265700.1	Wheat	unclear	70.55	79.51
AT1G20200.1	Thale cress	cytosol	70.55	79.51
TraesCS4A01G044600.1	Wheat	golgi	70.55	79.18
KRH17475	Soybean	nucleus	70.36	78.98
EES14113	Sorghum	cytosol, nucleus, plastid	71.09	78.83
HORVU4Hr1G071480.8	Barley	plastid	70.91	78.79
AT1G75990.1	Thale cress	cytosol	69.64	78.64
KRH05990	Soybean	cytosol, nucleus, plastid	69.27	77.76
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	70.0	77.62
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	69.82	77.42
TraesCS5A01G335200.1	Wheat	golgi	69.82	77.42
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	37.45	76.01
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	70.18	75.98
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	70.55	74.33
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	57.82	65.43
HORVU7Hr1G080070.2	Barley	cytosol	9.09	52.08
CDY01387	Canola	cytosol	16.36	42.06
Bra012219.1-P	Field mustard	cytosol	16.36	42.06
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	10.55	37.91

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	ncoils:Coil	GO:GO:0000502	GO:GO:0003674
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	EnsemblPlantsGene:GSMUA_Achr5G18970_001	EnsemblPlants:GSMUA_Achr5P18970_001
EnsemblPlants:GSMUA_Achr5T18970_001	InterPro:IPR000717	UniProt:M0SZS6	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375
PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI0002959C1C	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

Probable 26S proteasome non-ATPase regulatory subunit 3 [Source:GMGC_GENE;Acc:GSMUA_Achr5G18970_001]

Coordinates

chr5:-:20446681..20450875

Molecular Weight (calculated)

62542.9 Da

IEP (calculated)

8.137

GRAVY (calculated)

-0.291

Length

550 amino acids

Sequence
(BLAST)

001: MLFLSHYKYL FESIYQIIFS VKATNQDKFS LDESEDAGDQ TLSLASPSSP HPFLKFFREE EGKMTADVEM EVQAPSSSVP SATVPSTLQH LKEIASLIET
101: GAQGKEVRRI VRAVRLTMML RRKLRASVLS AFLGHVLPSG SEAFAKLSSF LPKDDEHDMD VDTAASAVQG PAKHCIPELE IFCYLIVLIY LIDQKRYNEA
201: KACSSASIAR LRNINRRTVD VIASRLYFYY SFSYELTNSL AEIRGTLLAL HRMATLRHDE LGQETLLNLL LRNYLHYNLY DQAEKLRSKA PRFEAHSNQQ
301: FCRYLFYLGK IRTIQLEYTD AKESLLQAAR KAPVVARGFQ IQCNKWAVIV RLLLGEIPER TVFMQKGMKK ALTPYFELTN AVRIGDLELF KIVADKFSGT
401: FSSDRTHNLI VRLRHNVIRT GLRNISIAYS RISLADVARK LRLDSPNPVA DAESIVAKAI RDGAIDATID HSNGWVVSKE TGDVYSTNEP QIAFNSRIAF
501: CLNMHNEAVR ALRFPPNSNK EKESEETRRE RQQQEQELAK HIAEEDDDDF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.