Factsheet for HORVU4Hr1G071480.8

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G018210.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	HORVU0Hr1G018210.6	AT2G44950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G265800.1	Wheat	plastid	96.16	97.54
TraesCS4D01G265700.1	Wheat	unclear	95.76	97.13
TraesCS4B01G265700.1	Wheat	plastid	95.76	97.13
TraesCS4A01G044600.1	Wheat	golgi	94.95	95.92
Os08t0550100-01	Rice	plasma membrane	89.09	90.74
EES14113	Sorghum	cytosol, nucleus, plastid	90.71	90.52
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	90.1	87.8
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	87.88	87.7
HORVU7Hr1G080070.2	Barley	cytosol	16.97	87.5
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	90.51	85.82
KRH61001	Soybean	nucleus	79.8	81.11
KRH51666	Soybean	nucleus	79.19	80.49
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	78.99	80.12
VIT_18s0001g01120.t01	Wine grape	nucleus	78.59	79.88
VIT_03s0038g02590.t01	Wine grape	plastid	77.58	78.85
PGSC0003DMT400015774	Potato	nucleus	78.18	78.34
KRH17475	Soybean	nucleus	76.36	77.14
AT1G75990.1	Thale cress	cytosol	74.95	76.18
AT1G20200.1	Thale cress	cytosol	74.95	76.02
KRH05990	Soybean	cytosol, nucleus, plastid	74.34	75.1
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	39.6	72.32
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	78.79	70.91
GSMUA_Achr8P13090_001	Banana	cytosol	33.54	68.59
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	60.4	61.52
CDY01387	Canola	cytosol	18.99	43.93
Bra012219.1-P	Field mustard	cytosol	18.99	43.93
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	9.49	30.72

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	UniProt:A0A287PKZ5	ncoils:Coil	GO:GO:0000502
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	EnsemblPlantsGene:HORVU4Hr1G071480
EnsemblPlants:HORVU4Hr1G071480.8	InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375	PFscan:PS50250
PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000B4626EE
InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:580623159..580626986

Molecular Weight (calculated)

55715.9 Da

IEP (calculated)

8.523

GRAVY (calculated)

-0.297

Length

495 amino acids

Sequence
(BLAST)

001: MTEDVQMGEP QSAPPPAAAA APAPSTLQRP ARAPDLKEIA AVIEAGSLSK EVRRISRAVR LTVALRRRLA ARDVSAFLAF ALPASSDAYA RLTPLLPKED
101: EAEMDVDAAA PPTQISIKHG LPEIEIYCSL LVLIFLIDQK KYDEAKSCAT GSIARLKNLN RRTVDVLASR LYFYYSYVYE LTNTLAEIRG NLLGLHRMAT
201: LHHDELGQET LLNLLLRNYL HYNLYDQAEK LRSKAPRFEA HSNQQFCRYL FYLGKIRTIQ LEYTDAKESL LQAARKAPAA ARGFRIQCNK WAIIVRLLLG
301: EIPERTVFMQ KGMKEALTPY FELTNAVRIG DLELFRAVAD KFASTFSADR THNLIVRLRH NVIRTGLRNI SISYSRISLA DIAKKLRLDT GNPVADAECI
401: VAKAIRDGAI DATIDHANGW MVSKETGDVY STNEPQAAFN SRIAFCLNMH NEAVKAMRFP PNSHKEKESA EKRRERLQQE EELAKHMAEE DDDDF

Best Arabidopsis Sequence Match ( AT1G75990.1 )
(BLAST)

001: MTQDVEMKDN QTPTQSVVSA PTSTLQNLKE IAALIDTGSY TKEVRRIARA VRLTVGLRRK LTGSVISSFL DFALVPGSEA HTRLSSFVPK SDEHDMEVDT
101: ASSNSQAPPK HLPAELEIYC YFIVLLFLID QKKYNEAKVC STASIARLKS VNRRTVDVIA SKLYFYYSLS YELTNDLAEI RSTLLALHHS ATLRHDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP VASLGFRIQC NKWAIIVRLL LGEIPERSIF
301: TQKGMEKTLR PYFELTNAVR IGDLELFGKI QEKFAKTFAE DRTHNLIVRL RHNVIRTGLR NISISYSRIS LQDVAQKLRL NSANPVADAE SIVAKAIRDG
401: AIDATIDHKN GCMVSKETGD IYSTNEPQTA FNSRIAFCLN MHNEAVRALR FPPNTHREKE SEEKRREMKQ QEEELAKYMA EEDDDDF

Arabidopsis Description

RPN3B26S proteasome non-ATPase regulatory subunit 3 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQR8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.