Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g111710.2.1 | Tomato | nucleus | 87.06 | 87.06 |
PGSC0003DMT400015774 | Potato | nucleus | 87.68 | 86.44 |
VIT_18s0001g01120.t01 | Wine grape | nucleus | 86.04 | 86.04 |
GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 84.19 | 84.02 |
Os09t0541900-01 | Rice | cytosol, nucleus, plastid | 79.26 | 79.26 |
Os08t0550100-01 | Rice | plasma membrane | 78.64 | 78.81 |
TraesCS4D01G265700.1 | Wheat | unclear | 78.64 | 78.48 |
TraesCS4B01G265800.1 | Wheat | plastid | 78.64 | 78.48 |
TraesCS4B01G265700.1 | Wheat | plastid | 78.64 | 78.48 |
TraesCS4A01G044600.1 | Wheat | golgi | 78.64 | 78.16 |
HORVU4Hr1G071480.8 | Barley | plastid | 78.85 | 77.58 |
EES14113 | Sorghum | cytosol, nucleus, plastid | 78.44 | 77.02 |
HORVU5Hr1G084540.1 | Barley | cytosol, nucleus, plastid | 78.03 | 76.61 |
TraesCS5A01G335200.1 | Wheat | golgi | 77.82 | 76.41 |
TraesCS5D01G340000.1 | Wheat | cytosol, nucleus, plastid | 77.62 | 76.21 |
Zm00001d053232_P005 | Maize | cytosol, nucleus, plastid | 78.85 | 75.59 |
GSMUA_Achr8P13090_001 | Banana | cytosol | 37.37 | 75.21 |
GSMUA_Achr5P18970_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 84.19 | 74.55 |
GSMUA_Achr8P13080_001 | Banana | cytosol, extracellular, plastid | 40.66 | 73.06 |
Zm00001d032010_P007 | Maize | cytosol, nucleus, plastid | 77.82 | 72.61 |
HORVU7Hr1G080070.2 | Barley | cytosol | 9.03 | 45.83 |
Protein Annotations
Gene3D:1.25.40.570 | EntrezGene:100264130 | wikigene:100264130 | MapMan:19.2.6.2.2.3 | InterPro:26S_Psome_reg_C | ProteinID:CCB60608 |
ProteinID:CCB60608.1 | ncoils:Coil | UniProt:F6I0Z2 | EMBL:FN596508 | GO:GO:0000502 | GO:GO:0003674 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0008541 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0042176 |
GO:GO:0050790 | InterPro:IPR000717 | EntrezGene:LOC100264130 | wikigene:LOC100264130 | InterPro:PCI_dom | PFAM:PF01399 |
PFAM:PF08375 | PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF7 | SMART:SM00088 | SMART:SM00753 |
SUPFAM:SSF46785 | TIGR:TC52112 | TIGR:TC59220 | UniParc:UPI00015C8497 | ArrayExpress:VIT_03s0038g02590 | EnsemblPlantsGene:VIT_03s0038g02590 |
EnsemblPlants:VIT_03s0038g02590.t01 | unigene:Vvi.3192 | InterPro:WH_DNA-bd_sf | RefSeq:XP_002279715 | RefSeq:XP_002279715.1 | SEG:seg |
Description
No Description!
Coordinates
chr3:-:1801880..1806519
Molecular Weight (calculated)
55651.8 Da
IEP (calculated)
9.098
GRAVY (calculated)
-0.375
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQDVEMKEL PAPSNSVTST TPSTLQHLKE IASLIESSAY AREVRRIVRA IRLTMILRRK LKATVLSGFL NYALNPGSEV HTRLSSYLPK EDEHDMEVDT
101: ATSATQTPAK HPLPELEIYC YLLVLIFLID QKKYKEAKAC SAASITRLKN LNRRTIDVLA SRLYSYYSLS YELTGDLAEI RGNLLALHRI ATLRHDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP VSALGFRVQC NKWAVIVRLL LGEIPERTVF
301: MQKGMEKALR PYFELTNAVR IGDLELFKSV AEKFSTTFSS DRTHNLIVRL RHNVIRTGLR NISISYSRIS LADVAQKLRL DSANPIADAE SIVAKAIRDG
401: AIDATLDHAN GWMVSKETGD IYSTNEPQFA FNSRIAFCLN MHNDAVRALR FPPNSHKEKE SAEKRRERQQ QEQELAKHIA EEDDDEF
101: ATSATQTPAK HPLPELEIYC YLLVLIFLID QKKYKEAKAC SAASITRLKN LNRRTIDVLA SRLYSYYSLS YELTGDLAEI RGNLLALHRI ATLRHDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPRF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP VSALGFRVQC NKWAVIVRLL LGEIPERTVF
301: MQKGMEKALR PYFELTNAVR IGDLELFKSV AEKFSTTFSS DRTHNLIVRL RHNVIRTGLR NISISYSRIS LADVAQKLRL DSANPIADAE SIVAKAIRDG
401: AIDATLDHAN GWMVSKETGD IYSTNEPQFA FNSRIAFCLN MHNDAVRALR FPPNSHKEKE SAEKRRERQQ QEQELAKHIA EEDDDEF
001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF
Arabidopsis Description
RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.