Factsheet for Solyc01g111710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015774	Potato	nucleus	98.15	96.76
VIT_03s0038g02590.t01	Wine grape	plastid	87.06	87.06
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	66.53	66.94
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	12.53	39.87

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	ncoils:Coil	GO:GO:0000502	GO:GO:0003674
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0008541	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0030234	GO:GO:0042176
GO:GO:0050790	InterPro:IPR000717	UniProt:K4B433	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375
PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
EnsemblPlantsGene:Solyc01g111710.2	EnsemblPlants:Solyc01g111710.2.1	UniParc:UPI00027678E2	InterPro:WH_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:97890234..97894688

Molecular Weight (calculated)

55366.4 Da

IEP (calculated)

8.524

GRAVY (calculated)

-0.334

Length

487 amino acids

Sequence
(BLAST)

001: MTQDVEMADQ APPSKSLSSA DPSVLPHLKE IASLIETGAY AREVRRISRA VRLTMVLRKK LKASSLGAFL NFVLVPGSDV HSRLSSFLPK EDEHDMEVDS
101: ATSGTLASVK HSLPELEIYC YLLVLIFLID QKKYDEAKAC SSASIARLKT VNRRTVDVLA SRLYFYYSLC YELTGDLAEI RGNLLSLHRI ATLRRDELGQ
201: ETLLNLLLRN YLHYNLYDHA EKLRSKAPHF EAHSNQQFCR YLFYLGKIRT IQLEYTDAKE SLLQAARKAP QAALGFRVQC NKWAIIVRLL LGEIPERTVF
301: MQKGMEKALR PYFELTNAVR IGDLELFKNV AEKFSSTFGS DRTNNLIVRL RHNVIRTGLR NISISYSRIS LTDVAKKLRL DSPNPVADAE SIVSKAIRDG
401: AIDATLDHAN GWMVSKETGD IYSTNEPQIA FNSRIAFCLN MHNEAVRALR FPPNSHKEKE SAEKRRERQQ QEQELAQHIA EEDDDDF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.