Factsheet for PGSC0003DMT400015774

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111710.2.1	Tomato	nucleus	96.76	98.15
VIT_03s0038g02590.t01	Wine grape	plastid	86.44	87.68
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	81.98	82.99
Os08t0550100-01	Rice	plasma membrane	78.54	79.84
Os09t0541900-01	Rice	cytosol, nucleus, plastid	78.54	79.67
TraesCS4B01G265700.1	Wheat	plastid	78.34	79.3
TraesCS4D01G265700.1	Wheat	unclear	77.94	78.89
TraesCS4B01G265800.1	Wheat	plastid	77.94	78.89
TraesCS4A01G044600.1	Wheat	golgi	77.73	78.37
HORVU4Hr1G071480.8	Barley	plastid	78.34	78.18
EES14113	Sorghum	cytosol, nucleus, plastid	77.94	77.62
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	78.74	76.57
TraesCS5A01G335200.1	Wheat	golgi	76.72	76.41
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	76.52	76.21
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	76.52	76.21
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	77.73	73.56
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	40.08	73.06
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	80.97	72.73
GSMUA_Achr8P13090_001	Banana	cytosol	35.22	71.9
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	67.0	68.11
HORVU7Hr1G080070.2	Barley	cytosol	9.31	47.92

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	ncoils:Coil	GO:GO:0000502	GO:GO:0003674
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	InterPro:IPR000717	UniProt:M1A6K1
InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375	EnsemblPlantsGene:PGSC0003DMG401006167	PGSC:PGSC0003DMG401006167	EnsemblPlants:PGSC0003DMT400015774
PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785
UniParc:UPI0002948867	InterPro:WH_DNA-bd_sf	SEG:seg	:	:	:

Description

26S proteasome non-ATPase regulatory subunit 3 [Source:PGSC_GENE;Acc:PGSC0003DMG401006167]

Coordinates

chr1:-:87659836..87664041

Molecular Weight (calculated)

56167.5 Da

IEP (calculated)

8.519

GRAVY (calculated)

-0.327

Length

494 amino acids

Sequence
(BLAST)

001: MTQDVEMADQ APPSKSLSSP DPSVLPHLKE IASLIETGAY AREVRRISRA VRLTMVLRKK LKASSLGAFL NYVLVPGSDV HSRLSSFLPK EDEHDMEVDS
101: APSGTPAPVK HPLPELEIYC YLLVLIFLID QKKYDEAKAC SSASIARLKT VNRRTVDVLA SRLYFYYSLC YELTGDLAEI RGNLLALHRI ATLRRDELGQ
201: ETLLNLLLRN YLHYNLYDQA EKLRSKAPHF EAHSNQQAIF LTIPFCRYLF YLGKIRTIQL EYTDAKESLL QAARKAPQAA LGFRVQCNKW AIIVRLLLGE
301: IPERTVFMQK GMEKALRPYF ELTNAVRIGD LELFRNVAEK FSSTFGSDRT NNLIVRLRHN VIRTGLRNIS ISYSRISLTD VAKKLRLDSP NPVADAESIV
401: SKAIRDGAID ATLDHANGWM VSKETGDIYS TNEPQIAFNS RIAFCLNMHN EAVRALRFPP NSHKEKESAE KRRERQQQEQ ELAQHIAEED DDDF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.