Factsheet for GSMUA_Achr8P13080_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, plastid

Predictor Summary:

plastid 2
nucleus 2
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P01610_001
GSMUA_Achr4P26960_001
GSMUA_Achr4P26970_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G75990.1	GSMUA_Achr1P01610_001	AT2G44950.1	21798944
AT1G75990.1	GSMUA_Achr4P26960_001	AT2G44950.1	21798944
AT1G75990.1	GSMUA_Achr4P26970_001	AT2G44950.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	77.49	43.03
Os08t0550100-01	Rice	plasma membrane	73.8	41.15
VIT_03s0038g02590.t01	Wine grape	plastid	73.06	40.66
KRH61001	Soybean	nucleus	73.06	40.66
Os09t0541900-01	Rice	cytosol, nucleus, plastid	72.69	40.45
KRH51666	Soybean	nucleus	72.69	40.45
TraesCS4D01G265700.1	Wheat	unclear	72.69	40.37
TraesCS4A01G044600.1	Wheat	golgi	72.69	40.2
TraesCS4B01G265800.1	Wheat	plastid	72.32	40.16
TraesCS4B01G265700.1	Wheat	plastid	72.32	40.16
EES14113	Sorghum	cytosol, nucleus, plastid	73.43	40.12
PGSC0003DMT400015774	Potato	nucleus	73.06	40.08
VIT_18s0001g01120.t01	Wine grape	nucleus	71.96	40.04
HORVU4Hr1G071480.8	Barley	plastid	72.32	39.6
KRH17475	Soybean	nucleus	71.22	39.39
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	72.69	38.78
AT1G20200.1	Thale cress	cytosol	69.74	38.73
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	70.48	38.51
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	70.48	38.51
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	74.17	38.51
TraesCS5A01G335200.1	Wheat	golgi	70.11	38.31
AT1G75990.1	Thale cress	cytosol	68.63	38.19
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	76.01	37.45
KRH05990	Soybean	cytosol, nucleus, plastid	67.16	37.14
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	61.62	34.36
CDY01387	Canola	cytosol	25.09	31.78
Bra012219.1-P	Field mustard	cytosol	25.09	31.78
GSMUA_Achr8P13090_001	Banana	cytosol	0.37	0.41
HORVU7Hr1G080070.2	Barley	cytosol	0.0	0.0
Solyc10g044990.1.1	Tomato	cytosol, nucleus, peroxisome	0.0	0.0

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	GO:GO:0000502	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0019538
GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	EnsemblPlantsGene:GSMUA_Achr8G13080_001	EnsemblPlants:GSMUA_Achr8P13080_001	EnsemblPlants:GSMUA_Achr8T13080_001
InterPro:IPR000717	UniProt:M0TQ11	InterPro:PCI_dom	PFAM:PF01399	PFAM:PF08375	PFscan:PS50250
PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000296758E
InterPro:WH_DNA-bd_sf	:	:	:	:	:

Description

Probable 26S proteasome non-ATPase regulatory subunit 3 [Source:GMGC_GENE;Acc:GSMUA_Achr8G13080_001]

Coordinates

chr8:-:9850301..9852118

Molecular Weight (calculated)

30857.6 Da

IEP (calculated)

10.124

GRAVY (calculated)

-0.049

Length

271 amino acids

Sequence
(BLAST)

001: MNEIFCRYLL YLGKIRTIQL EYTDAKESLL QAARKAPVAA RGFRIQCNKW AVIVRLLLGE IPERTVFMQK GMKKALTPYF ELTNAVRIGD LELFRTVADK
101: YSGTFSSDRT RNLIVRLRHN VIRTGLRNIS ISYSRISLAD VARKLRLDSE NPVADAESIV AKAIRDGAID ATIDHANGWM VSKETGDVYS TNEPQIAFNS
201: RIAFCLNMHN EAVRALRKMT TSNRVPRKGS CSCLTCFSLQ WISIRIKVVY DIYFVLNVEL SWLTLVSGHF H

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.