Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G75990.1 | Thale cress | cytosol | 91.6 | 91.79 |
| CDY54330 | Canola | cytosol, nucleus, plastid | 62.3 | 86.12 |
| KRH61001 | Soybean | nucleus | 83.4 | 83.57 |
| KRH51666 | Soybean | nucleus | 83.2 | 83.37 |
| VIT_18s0001g01120.t01 | Wine grape | nucleus | 82.38 | 82.55 |
| KRH17475 | Soybean | nucleus | 80.94 | 80.61 |
| KRH05990 | Soybean | cytosol, nucleus, plastid | 79.3 | 78.98 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 78.48 | 78.48 |
| Os09t0541900-01 | Rice | cytosol, nucleus, plastid | 76.43 | 76.59 |
| Os08t0550100-01 | Rice | plasma membrane | 76.02 | 76.34 |
| TraesCS4D01G265700.1 | Wheat | unclear | 76.02 | 76.02 |
| TraesCS4A01G044600.1 | Wheat | golgi | 76.02 | 75.71 |
| TraesCS4B01G265800.1 | Wheat | plastid | 75.61 | 75.61 |
| TraesCS4B01G265700.1 | Wheat | plastid | 75.41 | 75.41 |
| HORVU4Hr1G071480.8 | Barley | plastid | 76.02 | 74.95 |
| EES14113 | Sorghum | cytosol, nucleus, plastid | 76.02 | 74.8 |
| TraesCS5A01G335200.1 | Wheat | golgi | 75.41 | 74.19 |
| TraesCS5D01G340000.1 | Wheat | cytosol, nucleus, plastid | 75.41 | 74.19 |
| HORVU5Hr1G084540.1 | Barley | cytosol, nucleus, plastid | 75.2 | 73.99 |
| Zm00001d053232_P005 | Maize | cytosol, nucleus, plastid | 76.23 | 73.23 |
| Zm00001d032010_P007 | Maize | cytosol, nucleus, plastid | 76.02 | 71.07 |
| GSMUA_Achr5P18970_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 79.51 | 70.55 |
| GSMUA_Achr8P13080_001 | Banana | cytosol, extracellular, plastid | 38.73 | 69.74 |
| GSMUA_Achr8P13090_001 | Banana | cytosol | 33.81 | 68.18 |
| Solyc01g111700.1.1 | Tomato | endoplasmic reticulum, golgi, plasma membrane | 63.32 | 63.84 |
| PGSC0003DMT400015775 | Potato | endoplasmic reticulum, golgi, plasma membrane | 63.52 | 63.79 |
| HORVU7Hr1G080070.2 | Barley | cytosol | 9.02 | 45.83 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:19.2.6.2.2.3 | InterPro:26S_Psome_reg_C | EntrezGene:838609 | ProteinID:AAF79894.1 | ProteinID:AEE29950.1 |
| ArrayExpress:AT1G20200 | EnsemblPlantsGene:AT1G20200 | RefSeq:AT1G20200 | TAIR:AT1G20200 | RefSeq:AT1G20200-TAIR-G | EnsemblPlants:AT1G20200.1 |
| TAIR:AT1G20200.1 | EMBL:AY120740 | EMBL:AY230831 | Unigene:At.15440 | ncoils:Coil | Symbol:EMB2719 |
| GO:GO:0000502 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008541 | GO:GO:0009056 |
| GO:GO:0009506 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0042176 | GO:GO:0050790 |
| InterPro:IPR000717 | RefSeq:NP_173447.1 | InterPro:PCI_dom | PFAM:PF01399 | PFAM:PF08375 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50250 | PANTHER:PTHR10758 | PANTHER:PTHR10758:SF7 | UniProt:Q9LNU4 | SMART:SM00088 | SMART:SM00753 |
| SUPFAM:SSF46785 | UniParc:UPI0000162E2C | InterPro:WH_DNA-bd_sf | SEG:seg | : | : |
Description
RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
Coordinates
chr1:-:7001087..7004432
Molecular Weight (calculated)
55585.4 Da
IEP (calculated)
8.340
GRAVY (calculated)
-0.418
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.