CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04963
KRH16129
KRH30315
KRH54417
KRH63506
KRH75261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20200.1	KRH04963	AT5G45010.1	19843313
AT1G20200.1	KRH16129	AT5G45010.1	19843313
AT1G20200.1	KRH54417	AT5G45010.1	19843313
AT1G20200.1	KRH63506	AT5G45010.1	19843313
AT1G75990.1	KRH30315	AT2G44950.1	21798944
AT1G75990.1	KRH75261	AT2G44950.1	21798944
AT1G75990.1	KRH04963	AT5G45010.1	19843313
AT1G75990.1	KRH16129	AT5G45010.1	19843313
AT1G75990.1	KRH54417	AT5G45010.1	19843313
AT1G75990.1	KRH63506	AT5G45010.1	19843313

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17475	Soybean	nucleus	93.47	93.47
KRH51666	Soybean	nucleus	85.92	86.45
CDY31902	Canola	cytosol	12.65	86.11
KRH61001	Soybean	nucleus	85.31	85.83
CDX83743	Canola	cytosol	6.53	82.05
VIT_18s0001g01120.t01	Wine grape	nucleus	81.02	81.52
AT1G20200.1	Thale cress	cytosol	78.98	79.3
AT1G75990.1	Thale cress	cytosol	77.96	78.44
Bra015799.1-P	Field mustard	plastid	76.94	78.22
CDX87648	Canola	extracellular	76.73	78.01
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	77.55	77.87
CDX73215	Canola	cytosol, nucleus, plastid	77.76	77.6
Os08t0550100-01	Rice	plasma membrane	76.12	76.75
Os09t0541900-01	Rice	cytosol, nucleus, plastid	75.31	75.77
TraesCS4B01G265800.1	Wheat	plastid	74.9	75.2
TraesCS4D01G265700.1	Wheat	unclear	74.69	75.0
TraesCS4B01G265700.1	Wheat	plastid	74.69	75.0
TraesCS4A01G044600.1	Wheat	golgi	74.69	74.69
HORVU4Hr1G071480.8	Barley	plastid	75.1	74.34
EES14113	Sorghum	cytosol, nucleus, plastid	75.1	74.19
TraesCS5D01G340000.1	Wheat	cytosol, nucleus, plastid	74.9	73.99
TraesCS5A01G335200.1	Wheat	golgi	74.69	73.79
HORVU5Hr1G084540.1	Barley	cytosol, nucleus, plastid	74.69	73.79
Zm00001d053232_P005	Maize	cytosol, nucleus, plastid	75.51	72.83
CDY54330	Canola	cytosol, nucleus, plastid	52.45	72.8
GSMUA_Achr8P13090_001	Banana	cytosol	35.1	71.07
Zm00001d032010_P007	Maize	cytosol, nucleus, plastid	75.51	70.88
GSMUA_Achr5P18970_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	77.76	69.27
GSMUA_Achr8P13080_001	Banana	cytosol, extracellular, plastid	37.14	67.16
PGSC0003DMT400015775	Potato	endoplasmic reticulum, golgi, plasma membrane	63.47	63.99
Solyc01g111700.1.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	62.86	63.64
CDY00383	Canola	extracellular	14.08	60.0
CDY31901	Canola	cytosol	30.0	58.57
CDX83742	Canola	cytosol	6.53	56.14
HORVU7Hr1G080070.2	Barley	cytosol	9.8	50.0
CDX78831	Canola	extracellular	10.61	50.0
CDY22923	Canola	extracellular	19.39	43.38
CDY54331	Canola	cytosol	6.94	40.0
CDY47438	Canola	plastid	18.16	30.8

Protein Annotations

Gene3D:1.25.40.570	EntrezGene:100779667	MapMan:19.2.6.2.2.3	InterPro:26S_Psome_reg_C	EMBL:ACUP02010787	ncoils:Coil
EnsemblPlantsGene:GLYMA_17G260500	GO:GO:0000502	GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	GO:GO:0030234	GO:GO:0042176	GO:GO:0050790	InterPro:IPR000717	UniProt:K7MP32
ProteinID:KRH05989.1	EnsemblPlants:KRH05990	ProteinID:KRH05990	ProteinID:KRH05990.1	InterPro:PCI_dom	PFAM:PF01399
PFAM:PF08375	PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF7	SMART:SM00088	SMART:SM00753
SUPFAM:SSF46785	UniParc:UPI000233EADB	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:41457230..41462535

Molecular Weight (calculated)

55985.1 Da

IEP (calculated)

9.334

GRAVY (calculated)

-0.379

Length

490 amino acids

Sequence
(BLAST)

001: MSEDVEMKDQ ATPSHSLSSV PPSALQHLKE IASIIETGSY SKEVRRIARA LRLTFALRRK LTAPVLSSFL DYVLPPASEP HTRLSSFLPN PKEGDREMEV
101: DSSTSTIQTP AAKHLLPELE IYCYLLVLLF LIDQKRYDTA KACSSASIVR LKSLNRRTVN VIASRLYFYY SYSYELTGNL AEIRGNLLAL HRIATLRHDE
201: LGQETLLNLL LHNYLHYNLY DQAEKLRSKA PRFEAHSNQQ FCRYLFYLGK IRTIQLEYTD AKDLLLQAAR KAPSAAQGFQ IQCNKWAVIV RLLLGEIPER
301: IIFMHRGMEK SLRPYFELTN AVRIGDLELF RNATEKFGTT FSRDRTHNLI VRLRHNVIRT GLRNISISYS RISLADVAKK LRLNSASPVA DSESIVAKAI
401: RDGAIDASLD HANGWMVSKG TGDIYSTNEP QLALNSRIAF CLNMYNEAVR ALRFPPNKDK EKENAEKRRE RHQQEQELAK HIAEEDDDDF

Best Arabidopsis Sequence Match ( AT1G20200.1 )
(BLAST)

001: MTQDVEMKDN NTPSQSIISS STSTMQNLKE IAALIDTGSY TKEVRRIARA VRLTIGLRQK LTGSVLSSFL DFALVPGSEA HSRLSSFVPK GDEHDMEVDT
101: ASSATQAAPS KHLPAELEIY CYFIVLLFLI DQKKYNEAKA CSSASIARLK NVNRRTIDVI ASRLYFYYSL SYEQTGDLAE IRGTLLALHH SATLRHDELG
201: QETLLNLLLR NYLHYNLYDQ AEKLRSKAPR FEAHSNQQFC RYLFYLGKIR TIQLEYTDAK ESLLQAARKA PIAALGFRIQ CNKWAILVRL LLGEIPERSI
301: FTQKGMEKAL RPYFELTNAV RIGDLELFRT VQEKFLDTFA QDRTHNLIVR LRHNVIRTGL RNISISYSRI SLPDVAKKLR LNSENPVADA ESIVAKAIRD
401: GAIDATIDHK NGCMVSKETG DIYSTNEPQT AFNSRIAFCL NMHNEAVRAL RFPPNTHKEK ESDEKRRERK QQEEELAKHM AEEDDDDF

Arabidopsis Description

RPN3A26S proteasome non-ATPase regulatory subunit 3 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9LNU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.