Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH54417 | Soybean | cytosol | 97.26 | 97.26 |
| KRH16129 | Soybean | cytosol | 95.89 | 95.89 |
| Solyc03g114170.2.1 | Tomato | nucleus | 68.49 | 83.33 |
| PGSC0003DMT400069698 | Potato | nucleus | 83.56 | 82.43 |
| PGSC0003DMT400062932 | Potato | cytosol, mitochondrion, nucleus | 82.19 | 81.08 |
| VIT_14s0066g01530.t01 | Wine grape | nucleus | 80.82 | 80.82 |
| Bra004106.1-P | Field mustard | nucleus | 76.71 | 78.87 |
| CDY39298 | Canola | nucleus | 76.71 | 78.87 |
| VIT_17s0000g08090.t01 | Wine grape | cytosol, mitochondrion, nucleus | 73.97 | 78.26 |
| CDY07438 | Canola | nucleus | 76.71 | 77.78 |
| AT5G45010.1 | Thale cress | cytosol | 73.97 | 73.97 |
| KRH04963 | Soybean | vacuole | 84.93 | 52.1 |
Protein Annotations
| EntrezGene:100306674 | MapMan:16.11.2.4 | EMBL:ACUP02002695 | EMBL:BT090898 | UniProt:C6T0E4 | InterPro:DSS1_SEM1 |
| EnsemblPlantsGene:GLYMA_04G181200 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006406 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008541 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0043248 |
| EnsemblPlants:KRH63506 | ProteinID:KRH63506 | ProteinID:KRH63506.1 | ProteinID:KRH63507.1 | PFAM:PF05160 | PANTHER:PTHR16771 |
| PANTHER:PTHR16771:SF5 | SMART:SM01385 | UniParc:UPI0001B15420 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr4:+:44718146..44720466
Molecular Weight (calculated)
8778.4 Da
IEP (calculated)
3.505
GRAVY (calculated)
-1.542
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MATEPKAATE DVKIDLFEDD DEFEEFEINE EWDDKEEGKE VTQQWEDDWD DDDVSDDFSL QLRRELESNT EKN
1: MAAEPKAATA EVVKMDLFED DDEFEEFEIN EDWLEKEEVK EVSQQWEDDW DDDDVNDDFS RQLRKELENG TDKK
Arabidopsis Description
ATDSS1(I)Deletion of SUV3 suppressor 1(I) [Source:UniProtKB/TrEMBL;Acc:F4I886]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.