Factsheet for VIT_14s0066g01530.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0058g00500.t01
VIT_11s0016g02290.t01
VIT_18s0001g01120.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45010.1	VIT_18s0001g01120.t01	AT1G20200.1	19843313
AT5G45010.1	VIT_18s0001g01120.t01	AT1G75990.1	19843313
AT5G45010.1	VIT_11s0016g02290.t01	AT2G19560.1	19843313
AT5G45010.1	VIT_08s0058g00500.t01	AT5G01630.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114170.2.1	Tomato	nucleus	67.12	81.67
KRH63506	Soybean	cytosol	80.82	80.82
KRH54417	Soybean	cytosol	79.45	79.45
KRH16129	Soybean	cytosol	76.71	76.71
PGSC0003DMT400062932	Potato	cytosol, mitochondrion, nucleus	76.71	75.68
PGSC0003DMT400069698	Potato	nucleus	73.97	72.97
Bra004106.1-P	Field mustard	nucleus	69.86	71.83
CDY39298	Canola	nucleus	69.86	71.83
VIT_17s0000g08090.t01	Wine grape	cytosol, mitochondrion, nucleus	67.12	71.01
CDY07438	Canola	nucleus	69.86	70.83
AT5G45010.1	Thale cress	cytosol	69.86	69.86
KRH04963	Soybean	vacuole	71.23	43.7

Protein Annotations

EntrezGene:100242386	wikigene:100242386	MapMan:16.11.2.4	ProteinID:CBI34945	ProteinID:CBI34945.3	UniProt:D7TWS0
InterPro:DSS1_SEM1	EMBL:FN596252	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006406
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0008541	GO:GO:0009987	GO:GO:0016043
GO:GO:0043248	EntrezGene:LOC100242386	wikigene:LOC100242386	PFAM:PF05160	PANTHER:PTHR16771	PANTHER:PTHR16771:SF5
SMART:SM01385	UniParc:UPI00015C9381	ArrayExpress:VIT_14s0066g01530	EnsemblPlantsGene:VIT_14s0066g01530	EnsemblPlants:VIT_14s0066g01530.t01	RefSeq:XP_002279247
RefSeq:XP_002279247.1	RefSeq:XP_002279301	RefSeq:XP_002279301.1	RefSeq:XP_003633803	RefSeq:XP_003633803.1	RefSeq:XP_010660937.1
RefSeq:XP_010660938.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:-:27914835..27918964

Molecular Weight (calculated)

8845.5 Da

IEP (calculated)

3.555

GRAVY (calculated)

-1.810

Length

73 amino acids

Sequence
(BLAST)

1: MEKEPKVANE DPKVDLFEDD DEFEEFEINE EWDDKEEGKD TTQQWEDDWD DDDVNDDFSL QLRKELENNA EKS

Best Arabidopsis Sequence Match ( AT5G45010.1 )
(BLAST)

1: MAAEPKAAVE VVKVDLFEDD DEFEEFEINE DWLEKEEVKE VSLQWEDDWD DDDVSDDFSR QLKKELENAS EKK

Arabidopsis Description

DSS1(V)DSS1(V) [Source:UniProtKB/TrEMBL;Acc:Q2PDG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.