Factsheet for VIT_08s0058g00500.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g04170.t01
VIT_11s0016g00340.t01
VIT_14s0066g01530.t01
VIT_17s0000g08090.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01630.1	VIT_05s0020g04170.t01	AT3G22880.1	15014444
AT5G01630.1	VIT_05s0020g04170.t01	AT3G22880.1	16415210
AT5G01630.1	VIT_11s0016g00340.t01	AT5G20850.1	15014444
AT5G01630.1	VIT_11s0016g00340.t01	AT5G20850.1	16415210
AT5G01630.1	VIT_14s0066g01530.t01	AT5G45010.1	16415210
AT5G01630.1	VIT_17s0000g08090.t01	AT5G45010.1	16415210

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g050210.1.1	Tomato	cytosol	39.12	60.28
Os01t0164800-01	Rice	cytosol, mitochondrion	23.95	51.78
CDY08306	Canola	nucleus	51.55	49.13
GSMUA_Achr5P28060_001	Banana	nucleus	58.14	34.6
KRH17731	Soybean	mitochondrion	62.52	32.2
Bra005674.1-P	Field mustard	nucleus	57.77	29.81
CDY64035	Canola	nucleus	57.4	29.68
CDX80759	Canola	nucleus	59.96	29.63
AT5G01630.1	Thale cress	nucleus	61.61	29.18
CDY11187	Canola	nucleus	60.15	28.39
AT4G00020.2	Thale cress	nucleus	60.33	27.8
Bra037060.1-P	Field mustard	nucleus	56.49	26.68
TraesCS3A01G099300.4	Wheat	nucleus	56.12	19.39
Zm00001d024953_P024	Maize	nucleus	54.66	19.38
TraesCS3B01G115500.3	Wheat	nucleus	55.94	18.82
TraesCS3D01G099600.1	Wheat	nucleus	55.94	18.8
Solyc02g050200.1.1	Tomato	nucleus	26.14	18.06
HORVU3Hr1G017990.10	Barley	nucleus, plastid	55.03	18.0
Os01t0164900-01	Rice	cytosol, mitochondrion	9.14	10.39
HORVU3Hr1G015880.36	Barley	cytosol, mitochondrion, nucleus	0.0	0.0
TraesCS3A01G089200.3	Wheat	nucleus	0.0	0.0
TraesCS3B01G104500.1	Wheat	nucleus	0.0	0.0
TraesCS3D01G089500.2	Wheat	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.132.40	EntrezGene:100241398	wikigene:100241398	MapMan:13.3.6.4.2	MapMan:14.3.2.1	Gene3D:2.40.50.140
InterPro:BRCA2	InterPro:BRCA2_OB_1	InterPro:BRCA2_hlx_sf	ProteinID:CCB44815	ProteinID:CCB44815.1	UniProt:F6GXT5
EMBL:FN594967	GO:GO:0000724	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003697
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006281	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EntrezGene:LOC100241398	wikigene:LOC100241398	InterPro:NA-bd_OB-fold	PFAM:PF09103
PANTHER:PTHR11289	SMART:SM01341	SUPFAM:SSF50249	SUPFAM:SSF81872	SUPFAM:SSF81878	InterPro:Tower_dom
UniParc:UPI000210A630	ArrayExpress:VIT_08s0058g00500	EnsemblPlantsGene:VIT_08s0058g00500	EnsemblPlants:VIT_08s0058g00500.t01	RefSeq:XP_002264351	RefSeq:XP_002264351.2

Description

No Description!

Coordinates

chr8:-:9529159..9538337

Molecular Weight (calculated)

60432.3 Da

IEP (calculated)

6.330

GRAVY (calculated)

-0.129

Length

547 amino acids

Sequence
(BLAST)

001: MSNVLEELKY RYEREVNHGH RSAIKRILEG DASPSTMVVL CVSAIHSTCD MKIGTHSVSI NGSENSNAAK VELTDGWYSI DAFLDALLSK QLFAGKLFIG
101: QKLRIWGAGL CGWVGPVSPL ETSKTAGLLV HINGTYRAHW ADRLGFCKGV GPPLAFRCIK SNGGPVPQTL VRVTRIYPIL YKERLSNGGS IVRSVRMETK
201: MMQLYNHRCS TVVEGIISEF QRGTRDSCIN NDNDSEEGAK IFEILESAAE PEVLMAEMTS EQLASFTSYQ AKLEAIRQSD LQKSIEMALE GAGLSTREVT
301: PFMRVRVVGL TCKSYEGKIH HKEGLITIWN PTEKQQFELV EGQAYAVAGL MPLNSDSETL YLQARGSTTK WNPLSPLAIE HFEPFLNPRK SVLLSNLGEI
401: PLSSEFDIAA LVVYVGEVYT AAHQKKQWVF VTDGSVSELG SEEASNCLLA ISFCSPSVDD SFAPVNSNLE GSTVGFVNLI KRAKDQMNQL WVAEATENSD
501: YFFSFDLPHC YHLKNAAASA ERWAKISSLT IEKLKEKVLF IIGDCKG

Best Arabidopsis Sequence Match ( AT5G01630.1 )
(BLAST)

0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC

Arabidopsis Description

BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.