CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0058g00500.t01	Wine grape	cytosol	49.13	51.55
CDY64035	Canola	nucleus	93.73	50.85
Solyc02g050210.1.1	Tomato	cytosol	23.87	38.59
CDX80759	Canola	nucleus	74.22	38.48
CDY11187	Canola	nucleus	76.66	37.96
Os01t0164800-01	Rice	cytosol, mitochondrion	14.11	32.02
KRH17731	Soybean	mitochondrion	55.92	30.23
GSMUA_Achr5P28060_001	Banana	nucleus	47.39	29.6
Solyc02g050200.1.1	Tomato	nucleus	27.87	20.2
Zm00001d024953_P024	Maize	nucleus	47.39	17.63
TraesCS3A01G099300.4	Wheat	nucleus	45.64	16.55
TraesCS3B01G115500.3	Wheat	nucleus	45.99	16.24
TraesCS3D01G099600.1	Wheat	nucleus	45.99	16.22
HORVU3Hr1G017990.10	Barley	nucleus, plastid	46.34	15.91
Os01t0164900-01	Rice	cytosol, mitochondrion	9.06	10.81
TraesCS3A01G089200.3	Wheat	nucleus	0.0	0.0
TraesCS3B01G104500.1	Wheat	nucleus	0.0	0.0
TraesCS3D01G089500.2	Wheat	nucleus	0.0	0.0
HORVU3Hr1G015880.36	Barley	cytosol, mitochondrion, nucleus	0.0	0.0

Protein Annotations

MapMan:13.3.6.4.2	MapMan:14.3.2.1	Gene3D:2.40.50.140	GO:A0A078F4H3	UniProt:A0A078F4H3	InterPro:BRCA2
InterPro:BRCA2_OB_1	InterPro:BRCA2_hlx	InterPro:BRCA2_hlx_sf	EnsemblPlants:CDY08306	ProteinID:CDY08306	ProteinID:CDY08306.1
GO:GO:0000724	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00125651001	InterPro:NA-bd_OB-fold	PFAM:PF09103	PFAM:PF09169
PANTHER:PTHR11289	SUPFAM:SSF50249	SUPFAM:SSF81872	SUPFAM:SSF81878	UniParc:UPI0004EED512	SEG:seg

Description

BnaA05g13130DBnaA05g13130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4H3]

Coordinates

chrLK031984:+:838449..841814

Molecular Weight (calculated)

64401.3 Da

IEP (calculated)

7.494

GRAVY (calculated)

-0.232

Length

574 amino acids

Sequence
(BLAST)

001: MAVPEHVRRI KSSNADKYAF GDVSSSSVVG AETFHQMLAE SGASLQCASR EWVTNHYRWI VWKLACYETY YPAKCRGNFL TITNVLQELR YRYEREVNHG
101: HCSAIKRILS GDAPASSMMV LCISAINPET RETHGSDSGN NVKIELTDGW YSINAALDVM LQKQLNAGKL FIGQKLRILG ARLSGWSTPT SPLEAAISNT
201: ISLLLNINGT YRAHWADRLG FCKEVGVPLA LNCIKCNGGP VPKTLAGITR IYPILYKEKL GEKKSVVRSE RMEWRMIELH NQRQGLICEY QGGINGVDSQ
301: NDTDSKEGAK LFKLLESAAE PDFLMADMSM EELNCFNRYK EKFEAAMEKK MEKSVAKALE DAGLGERDVT PFMRIRLVGL TSLSYDGHPN PKEAILTIWN
401: PTETQKILPF FNPRKSMSLL DLGEIPLGSE FDMAAYVVYV GNAYTDVDQK KQWVFVTDGS LQYSDSGKIA NRLLAISFRT SSMDDLHSPL ISHNLVGSVV
501: GFCNLIKRAK DVENDMWVCE AMENSDYFLN ADAACPSHLK TSSGHIQIWA NLSFSKSVRS LSIIYYIIFY QMHR

Best Arabidopsis Sequence Match ( AT4G00020.1 )
(BLAST)

0001: MSTWQLFPDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIARE EAMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAEKVTYSD
0101: LRNTNCSIPQ MRQVDTAETL PMFRTASGKS VPLKESSIAK AMSILGSDKI IDSDNVLPRE SGFGVSNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SSQQHGWSGL KTHEEFDATV VKHHSGTPGQ YEDYVSGKRS EVLNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPEKD ERLSDIAINN GSANRGYIAH EEKTSNKHTP NSFVSPLWSS SKQFSSVNLE NLASGGNLIK KFDAAVDETD CALNATHGLS NNRSLASDMA
0401: VNNSKVNGFI PRGRQPGRPA DQPLVDITNR RDTAYAYNKQ DSTQKKRLGK TVSVSPFKRP RISSFKTPSK KHALQASSGL SVVSCDTLTS KKVLSTRYPE
0501: KSPRVYIKDF FGMHPTATTR MDYVPDHVRR IKSSNADKYV FCDESSSNKV GAETFLQMLA ESGASLQHAS RKWVTNHYRW IVWKLACYDI YYPAKCRGNF
0601: LTITNVLEEL KYRYEREVNH GHCSAIKRIL SGDAPASSMM VLCISAINPK TDNDSQEAHC SDSCSNVKVE LTDGWYSMNA ALDVVLTKQL NAGKLFVGQK
0701: LRILGAGLSG WATPTSPLEA VISSTICLLL NINGTYRAHW ADRLGFCKEI GVPLALNCIK CNGGPVPKTL AGIKRIYPIL YKERLGEKKS IVRSERIESR
0801: IIQLHNQRRS ALVEGIMCEY QRGINGVHSQ NDTDSEEGAK IFKLLETAAE PEFLMAEMSP EQLRSFTTYK AKFEAAQQMR KEKSVAETLE DAGLGERNVT
0901: PFMRIRLVGL TSLSYEGEHN PKEGIVTIWD PTERQRTELT EGKIYMMKGL VPINSDSEIL YLHARGSSSR WQPLSPKDSE NFQPFFNPRK PISLSNLGEI
1001: PLSSEFDIAA YVVYVGNAYT DVLQKKQWVF VTDGSAQHSG EISNSLLAIS FSTSFMDDSS VSHISHNLVG SVVGFCNLIK RAKDVTNEIW VAEAAENSVY
1101: FINAEAAYSS HLKTSSAHIQ TWAKLSSSKS VIHELRQRVL SIIGACKSPS C

Arabidopsis Description

MEE43BREAST CANCER 2 like 2A [Source:UniProtKB/TrEMBL;Acc:F4JGU5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.