Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G115500.3 | Wheat | nucleus | 97.47 | 94.9 |
| TraesCS3D01G099600.1 | Wheat | nucleus | 97.03 | 94.35 |
| HORVU3Hr1G017990.10 | Barley | nucleus, plastid | 90.52 | 85.71 |
| TraesCS3A01G089200.3 | Wheat | nucleus | 42.39 | 76.25 |
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 11.31 | 70.75 |
| Zm00001d024953_P024 | Maize | nucleus | 59.07 | 60.6 |
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 19.39 | 56.12 |
| GSMUA_Achr5P28060_001 | Banana | nucleus | 26.6 | 45.81 |
| CDY08306 | Canola | nucleus | 16.55 | 45.64 |
| Solyc02g050210.1.1 | Tomato | cytosol | 9.73 | 43.38 |
| KRH17731 | Soybean | mitochondrion | 25.58 | 38.14 |
| CDY64035 | Canola | nucleus | 23.44 | 35.07 |
| AT5G01630.1 | Thale cress | nucleus | 25.39 | 34.81 |
| CDX80759 | Canola | nucleus | 24.19 | 34.6 |
| Bra005674.1-P | Field mustard | nucleus | 22.99 | 34.34 |
| CDY11187 | Canola | nucleus | 24.51 | 33.48 |
| Solyc02g050200.1.1 | Tomato | nucleus | 16.49 | 32.95 |
| AT4G00020.2 | Thale cress | nucleus | 24.57 | 32.77 |
| Bra037060.1-P | Field mustard | nucleus | 23.37 | 31.95 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 7.39 | 24.32 |
Protein Annotations
| MapMan:13.3.6.4.2 | MapMan:14.3.2.1 | Gene3D:2.40.50.140 | InterPro:BRCA2_OB_1 | InterPro:BRCA2_hlx | InterPro:BRCA2_hlx_sf |
| InterPro:BRCA2_repeat | GO:GO:0000724 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | InterPro:IPR002093 | InterPro:NA-bd_OB-fold | PFAM:PF00634 | PFAM:PF09103 |
| PFAM:PF09169 | PFscan:PS50138 | SMART:SM01341 | SUPFAM:SSF50249 | SUPFAM:SSF81872 | SUPFAM:SSF81878 |
| InterPro:Tower_dom | EnsemblPlantsGene:TraesCS3A01G099300 | EnsemblPlants:TraesCS3A01G099300.4 | TIGR:cd04493 | SEG:seg | : |
Description
No Description!
Coordinates
chr3A:+:64047452..64058568
Molecular Weight (calculated)
172919.0 Da
IEP (calculated)
8.371
GRAVY (calculated)
-0.442
Length
1583 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPGRWRVWGQ PDGRLVWIPA PEPDAPPPPA AAPPLPPPLP LGRGAGIAAD PSEDALAKGR GAADGCRVES MADLLVQARN TLLEGDGMSG ATVDAGEGQL
0101: FCTGSGRSVS VSERAIRRAR ALVGEEVEKA GNKRKQPFDD VPGAEGESRE MDAPFRGGVH NTTVPPVFQT GSGKAVLLGK DSIQKARAIL GEQPFDHVPD
0201: AEGELSEMDA PFRGGVYNTT MPPVFQTGSG KAVLLGKDSI QKARVLLEGV DGMEQFPLFQ TGSGRVVSVT AASVQKAKSV LKDNNTREES FGRPNQPMMF
0301: QTGSGRPAMI SERSIERSRA VANEGDAEKS GHWDTDCQFP VFQTGLGKPV AVSWSSVQKA KAVLEEEKIK TTGRGESSDC ATTLQTETPT SVLMSSSLIM
0401: NSRSVTPKED SAMQVTRTEK NHKDDDHVPL FQTGLGRSIA ISKSSLKRAS AVLEPRNIAK ELEDEAHLDG AHDTPAFRTG LGRSILASEN SRKELPILEA
0501: EEAVKSVNNY NRETFVEEAT FQAGIQKFVP QNRISSHKAS MLLEQRNFME KGYKDSGSQL PLFRTGSGKS VLISESSVQK ARAVLEEQGI NKDNHKLLNM
0601: DKKIPVFASP LKTSCARTVN ISSVGVSRAA TLLGLEENTL STQFFGHVGD KLGTKINFEQ ENAEQRLGLA SYPTENQVHK EPHRPFELSN NTISDSGEHS
0701: IRFSTAGGRS MAISSDALER AKSLLGESDL VVSTNNLVSY PLGSACNDKM QNSTVVPKEG GSDLSKRRRV SGRTELATFS HQAMSDRKDT GSFGNAVSDI
0801: HPTSENTNRF HVGSRSTSEI PKIVKSSSRC LSETDNTNDT KDKTQQLHMP AGALFDISNF MGSYSGNIDH VVNEKRRILG RNSASSFKRP RSSRFITPIS
0901: TNRQSSAGVP KPPPTQITSC RTKLSAYYPF QHKRKTWKEY FGGPPCFNCL AEHIIDEVKL MDAKGAEKYK FHNMNTGAEE FQKLLIACGA SLTYATKEWV
1001: NNHYKWIVWK LGSLERCYPT KAAGKFLTVA NVLDELKYRY DREVNNGHRS AIKKIVEGNA LPSLMMVLCI SAIYSHPDVN KLEAVGTDGN ENSIENKSLL
1101: AAKRNMPAHI ELTDGWYALE ASLDVALSEQ LQKRKLFIGQ KLRIWGASLC GWTGPVSFHE ASGTVKLMVH VNGSYRARWD DPLGFCKHVG PPLAFKCIKA
1201: SGGRVPRTLV GVARIYPVLY KERLPDGSSI VRSERMERKA LQLYHQRVSK IAEDIMSEQD ENCASTDDSE EGAKICKMLE QAAEPEVMMA GLTSEQMISF
1301: SSYQAKQKEA RQNEVAKKVE NALEVAGLSS RDVTPFLKVR VTSLAHKISA TKTINKEGLI TIWNPTEKQK ADLVEGQVYI ATGLLPSAHC TNILYLHARG
1401: SSTMWKPLAS AQAADFQPFF TPRKAVELSL IGEVPLASEF DIAGVVLHVG EVYLCSNQKR QWLFLTDGSK FISASQSTEQ DDCLLAVSFS CSSASDDGAF
1501: FSYALSGNTV GFSNLVKRQK DQTRHIWVAE ATQNSTFTLS HEISKKSHLK EAATCAEKWA SSSFDKIQQL KEKVLCIIGD SGG
0101: FCTGSGRSVS VSERAIRRAR ALVGEEVEKA GNKRKQPFDD VPGAEGESRE MDAPFRGGVH NTTVPPVFQT GSGKAVLLGK DSIQKARAIL GEQPFDHVPD
0201: AEGELSEMDA PFRGGVYNTT MPPVFQTGSG KAVLLGKDSI QKARVLLEGV DGMEQFPLFQ TGSGRVVSVT AASVQKAKSV LKDNNTREES FGRPNQPMMF
0301: QTGSGRPAMI SERSIERSRA VANEGDAEKS GHWDTDCQFP VFQTGLGKPV AVSWSSVQKA KAVLEEEKIK TTGRGESSDC ATTLQTETPT SVLMSSSLIM
0401: NSRSVTPKED SAMQVTRTEK NHKDDDHVPL FQTGLGRSIA ISKSSLKRAS AVLEPRNIAK ELEDEAHLDG AHDTPAFRTG LGRSILASEN SRKELPILEA
0501: EEAVKSVNNY NRETFVEEAT FQAGIQKFVP QNRISSHKAS MLLEQRNFME KGYKDSGSQL PLFRTGSGKS VLISESSVQK ARAVLEEQGI NKDNHKLLNM
0601: DKKIPVFASP LKTSCARTVN ISSVGVSRAA TLLGLEENTL STQFFGHVGD KLGTKINFEQ ENAEQRLGLA SYPTENQVHK EPHRPFELSN NTISDSGEHS
0701: IRFSTAGGRS MAISSDALER AKSLLGESDL VVSTNNLVSY PLGSACNDKM QNSTVVPKEG GSDLSKRRRV SGRTELATFS HQAMSDRKDT GSFGNAVSDI
0801: HPTSENTNRF HVGSRSTSEI PKIVKSSSRC LSETDNTNDT KDKTQQLHMP AGALFDISNF MGSYSGNIDH VVNEKRRILG RNSASSFKRP RSSRFITPIS
0901: TNRQSSAGVP KPPPTQITSC RTKLSAYYPF QHKRKTWKEY FGGPPCFNCL AEHIIDEVKL MDAKGAEKYK FHNMNTGAEE FQKLLIACGA SLTYATKEWV
1001: NNHYKWIVWK LGSLERCYPT KAAGKFLTVA NVLDELKYRY DREVNNGHRS AIKKIVEGNA LPSLMMVLCI SAIYSHPDVN KLEAVGTDGN ENSIENKSLL
1101: AAKRNMPAHI ELTDGWYALE ASLDVALSEQ LQKRKLFIGQ KLRIWGASLC GWTGPVSFHE ASGTVKLMVH VNGSYRARWD DPLGFCKHVG PPLAFKCIKA
1201: SGGRVPRTLV GVARIYPVLY KERLPDGSSI VRSERMERKA LQLYHQRVSK IAEDIMSEQD ENCASTDDSE EGAKICKMLE QAAEPEVMMA GLTSEQMISF
1301: SSYQAKQKEA RQNEVAKKVE NALEVAGLSS RDVTPFLKVR VTSLAHKISA TKTINKEGLI TIWNPTEKQK ADLVEGQVYI ATGLLPSAHC TNILYLHARG
1401: SSTMWKPLAS AQAADFQPFF TPRKAVELSL IGEVPLASEF DIAGVVLHVG EVYLCSNQKR QWLFLTDGSK FISASQSTEQ DDCLLAVSFS CSSASDDGAF
1501: FSYALSGNTV GFSNLVKRQK DQTRHIWVAE ATQNSTFTLS HEISKKSHLK EAATCAEKWA SSSFDKIQQL KEKVLCIIGD SGG
0001: MSTWQLFPDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIARE EAMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAEKVTYSD
0101: LRNTNCSIPQ MRQVDTAETL PMFRTASGKS VPLKESSIAK AMSILGSDKI IDSDNVLPRE SGFGVSNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SSQQHGWSGL KTHEEFDATV VKHHSGTPGQ YEDYVSGKRS EVLNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPEKD ERLSDIAINN GSANRGYIAH EEKTSNKHTP NSFVSPLWSS SKQFSSVNLE NLASGGNLIK KFDAAVDETD CALNATHGLS NNRSLASDMA
0401: VNNSKVNGFI PRGRQPGRPA DQPLVDITNR RDTAYAYNKQ DSTQKKRLGK TVSVSPFKRP RISSFKTPSK KHALQASSGL SVVSCDTLTS KKVLSTRYPE
0501: KSPRVYIKDF FGMHPTATTR MDYVPDHVRR IKSSNADKYV FCDESSSNKV GAETFLQMLA ESGASLQHAS RKWVTNHYRW IVWKLACYDI YYPAKCRGNF
0601: LTITNVLEEL KYRYEREVNH GHCSAIKRIL SGDAPASSMM VLCISAINPK TDNDSQEAHC SDSCSNVKVE LTDGWYSMNA ALDVVLTKQL NAGKLFVGQK
0701: LRILGAGLSG WATPTSPLEA VISSTICLLL NINGTYRAHW ADRLGFCKEI GVPLALNCIK CNGGPVPKTL AGIKRIYPIL YKERLGEKKS IVRSERIESR
0801: IIQLHNQRRS ALVEGIMCEY QRGINGVHSQ NDTDSEEGAK IFKLLETAAE PEFLMAEMSP EQLRSFTTYK AKFEAAQQMR KEKSVAETLE DAGLGERNVT
0901: PFMRIRLVGL TSLSYEGEHN PKEGIVTIWD PTERQRTELT EGKIYMMKGL VPINSDSEIL YLHARGSSSR WQPLSPKDSE NFQPFFNPRK PISLSNLGEI
1001: PLSSEFDIAA YVVYVGNAYT DVLQKKQWVF VTDGSAQHSG EISNSLLAIS FSTSFMDDSS VSHISHNLVG SVVGFCNLIK RAKDVTNEIW VAEAAENSVY
1101: FINAEAAYSS HLKTSSAHIQ TWAKLSSSKS VIHELRQRVL SIIGACKSPS C
0101: LRNTNCSIPQ MRQVDTAETL PMFRTASGKS VPLKESSIAK AMSILGSDKI IDSDNVLPRE SGFGVSNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SSQQHGWSGL KTHEEFDATV VKHHSGTPGQ YEDYVSGKRS EVLNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPEKD ERLSDIAINN GSANRGYIAH EEKTSNKHTP NSFVSPLWSS SKQFSSVNLE NLASGGNLIK KFDAAVDETD CALNATHGLS NNRSLASDMA
0401: VNNSKVNGFI PRGRQPGRPA DQPLVDITNR RDTAYAYNKQ DSTQKKRLGK TVSVSPFKRP RISSFKTPSK KHALQASSGL SVVSCDTLTS KKVLSTRYPE
0501: KSPRVYIKDF FGMHPTATTR MDYVPDHVRR IKSSNADKYV FCDESSSNKV GAETFLQMLA ESGASLQHAS RKWVTNHYRW IVWKLACYDI YYPAKCRGNF
0601: LTITNVLEEL KYRYEREVNH GHCSAIKRIL SGDAPASSMM VLCISAINPK TDNDSQEAHC SDSCSNVKVE LTDGWYSMNA ALDVVLTKQL NAGKLFVGQK
0701: LRILGAGLSG WATPTSPLEA VISSTICLLL NINGTYRAHW ADRLGFCKEI GVPLALNCIK CNGGPVPKTL AGIKRIYPIL YKERLGEKKS IVRSERIESR
0801: IIQLHNQRRS ALVEGIMCEY QRGINGVHSQ NDTDSEEGAK IFKLLETAAE PEFLMAEMSP EQLRSFTTYK AKFEAAQQMR KEKSVAETLE DAGLGERNVT
0901: PFMRIRLVGL TSLSYEGEHN PKEGIVTIWD PTERQRTELT EGKIYMMKGL VPINSDSEIL YLHARGSSSR WQPLSPKDSE NFQPFFNPRK PISLSNLGEI
1001: PLSSEFDIAA YVVYVGNAYT DVLQKKQWVF VTDGSAQHSG EISNSLLAIS FSTSFMDDSS VSHISHNLVG SVVGFCNLIK RAKDVTNEIW VAEAAENSVY
1101: FINAEAAYSS HLKTSSAHIQ TWAKLSSSKS VIHELRQRVL SIIGACKSPS C
Arabidopsis Description
MEE43BREAST CANCER 2 like 2A [Source:UniProtKB/TrEMBL;Acc:F4JGU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.