Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11187 | Canola | nucleus | 88.8 | 84.81 |
| CDY08306 | Canola | nucleus | 38.48 | 74.22 |
| AT5G01630.1 | Thale cress | nucleus | 74.89 | 71.77 |
| AT4G00020.2 | Thale cress | nucleus | 73.89 | 68.91 |
| CDY64035 | Canola | nucleus | 60.7 | 63.52 |
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 29.63 | 59.96 |
| Solyc02g050210.1.1 | Tomato | cytosol | 15.36 | 47.89 |
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 9.85 | 43.08 |
| KRH17731 | Soybean | mitochondrion | 41.28 | 43.03 |
| GSMUA_Achr5P28060_001 | Banana | nucleus | 32.07 | 38.63 |
| Solyc02g050200.1.1 | Tomato | nucleus | 25.56 | 35.73 |
| Zm00001d024953_P024 | Maize | nucleus | 35.41 | 25.41 |
| TraesCS3A01G099300.4 | Wheat | nucleus | 34.6 | 24.19 |
| TraesCS3D01G099600.1 | Wheat | nucleus | 34.87 | 23.71 |
| TraesCS3B01G115500.3 | Wheat | nucleus | 34.78 | 23.68 |
| HORVU3Hr1G017990.10 | Barley | nucleus, plastid | 34.6 | 22.91 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 8.22 | 18.92 |
| TraesCS3B01G104500.1 | Wheat | nucleus | 7.5 | 9.96 |
| TraesCS3A01G089200.3 | Wheat | nucleus | 7.5 | 9.43 |
| TraesCS3D01G089500.2 | Wheat | nucleus | 7.32 | 9.34 |
| HORVU3Hr1G015880.36 | Barley | cytosol, mitochondrion, nucleus | 7.23 | 8.66 |
Protein Annotations
| MapMan:13.3.6.4.2 | MapMan:14.3.2.1 | Gene3D:2.40.50.140 | GO:A0A078CXJ6 | InterPro:BRCA2 | InterPro:BRCA2_OB_1 |
| InterPro:BRCA2_hlx | InterPro:BRCA2_hlx_sf | InterPro:BRCA2_repeat | EnsemblPlants:CDX80759 | ProteinID:CDX80759 | ProteinID:CDX80759.1 |
| GO:GO:0000724 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00134132001 | InterPro:IPR002093 | InterPro:NA-bd_OB-fold | PFAM:PF00634 |
| PFAM:PF09103 | PFAM:PF09169 | PFscan:PS50138 | PANTHER:PTHR11289 | SUPFAM:SSF50249 | SUPFAM:SSF81872 |
| SUPFAM:SSF81878 | UniParc:UPI0004EEEA8D | : | : | : | : |
Description
BnaC03g00130D
Coordinates
chrLK031823:+:86323..92273
Molecular Weight (calculated)
122073.0 Da
IEP (calculated)
9.415
GRAVY (calculated)
-0.384
Length
1107 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSTWSLLPDS SGNCFRWEVA GRILQSDSED SAIESTAPLP SMNDLLLQGW SKLKQGDGAL FRTGMGNSVA LKAKSVLEDE HHHHPDGGSN LQSDSAATLP
0101: MFRTASGRSV PLKDSSIAKA ISILGPPHSD NVPLRESGFG DPNSFFQTPS NKMVIVDDFT GFNHVKRSNQ KRGCSELKTH ATGVLHHSET PGQYEGHVFQ
0201: KISESLYPSA VVPPTMFQTA GGKTLSVSVQ ALKRARNLLG DPDSVTLFDD VPAVDQFSTP QKVQRLGDLP INNRNANTGY NAFEGKTSNK HTATSFVSPL
0301: RSSSKQFRSV KLEDLASGGN LIKKFDAAVD DTDRALNTTK LATHGVSNNR PMAVNNAKAN GFIPIAKQSG QPLVDITNRS ANNKQDSTQK KRLGKTIFVS
0401: PFKKPRNSSF KTPLKKNAQH ALSGLSIVSS DTLNSKKVLS TRYPERSPRV YIKDYFRMHP TVTTKMNYVP DHVRRIKSSN ADKYVFRDES SSNMVGAETF
0501: FQMLAESEMF CERSTVSRIW IVWKLACYET CYPVICRGNF LTITNVFEEL KYRYEREVNH GHCSAIKRIL SGDAPASSMM VLYISAINPK TDNDSQKALG
0601: SGSGSNVKVE LSDGWYSMNA ALDVNLTKQL NAGKLFVGQK LRHANVLISY LKILGAGLSG WATPTSPLEA VISNTICLLL NINGTYRAHW ADRLGFCKEV
0701: GAPLAFNCIK GNGGPVPKTL AGITRIYPIL YKERLGERKS IIRSERMESR MTELHNQRQE CHERSALIEG LMCEYERGGN GVHSQNDTDS EEGAKVFKLL
0801: ETASEPELLM AEMSLEQLTS FTTYKSKFEA AKQIQMEKSV AQALEEAGLS ERDVTPFMRI RLVGLTSLSY EGVHNPKEGI VTIWNPTERQ RTELTEGKIY
0901: IMKGLVPTVS DSETLYLHAR GSSSRWEPLS PKASSSFQPF FNPRKPISLS NFGGIPLSSE FDIAAYVVYV GNVYTDVEQK KQWVFVTDGS TQRSRSGEIS
1001: NSLLAISFST PSMDDLPTPH ISHSLVGSVV GFCNLIKRAK DAKNNMWVGE ATENSVYSIN AEAAYSSHLK TSSSHIQTWA KLSSFNSVIH KLRQIVLFVI
1101: GASTCSR
0101: MFRTASGRSV PLKDSSIAKA ISILGPPHSD NVPLRESGFG DPNSFFQTPS NKMVIVDDFT GFNHVKRSNQ KRGCSELKTH ATGVLHHSET PGQYEGHVFQ
0201: KISESLYPSA VVPPTMFQTA GGKTLSVSVQ ALKRARNLLG DPDSVTLFDD VPAVDQFSTP QKVQRLGDLP INNRNANTGY NAFEGKTSNK HTATSFVSPL
0301: RSSSKQFRSV KLEDLASGGN LIKKFDAAVD DTDRALNTTK LATHGVSNNR PMAVNNAKAN GFIPIAKQSG QPLVDITNRS ANNKQDSTQK KRLGKTIFVS
0401: PFKKPRNSSF KTPLKKNAQH ALSGLSIVSS DTLNSKKVLS TRYPERSPRV YIKDYFRMHP TVTTKMNYVP DHVRRIKSSN ADKYVFRDES SSNMVGAETF
0501: FQMLAESEMF CERSTVSRIW IVWKLACYET CYPVICRGNF LTITNVFEEL KYRYEREVNH GHCSAIKRIL SGDAPASSMM VLYISAINPK TDNDSQKALG
0601: SGSGSNVKVE LSDGWYSMNA ALDVNLTKQL NAGKLFVGQK LRHANVLISY LKILGAGLSG WATPTSPLEA VISNTICLLL NINGTYRAHW ADRLGFCKEV
0701: GAPLAFNCIK GNGGPVPKTL AGITRIYPIL YKERLGERKS IIRSERMESR MTELHNQRQE CHERSALIEG LMCEYERGGN GVHSQNDTDS EEGAKVFKLL
0801: ETASEPELLM AEMSLEQLTS FTTYKSKFEA AKQIQMEKSV AQALEEAGLS ERDVTPFMRI RLVGLTSLSY EGVHNPKEGI VTIWNPTERQ RTELTEGKIY
0901: IMKGLVPTVS DSETLYLHAR GSSSRWEPLS PKASSSFQPF FNPRKPISLS NFGGIPLSSE FDIAAYVVYV GNVYTDVEQK KQWVFVTDGS TQRSRSGEIS
1001: NSLLAISFST PSMDDLPTPH ISHSLVGSVV GFCNLIKRAK DAKNNMWVGE ATENSVYSIN AEAAYSSHLK TSSSHIQTWA KLSSFNSVIH KLRQIVLFVI
1101: GASTCSR
0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
Arabidopsis Description
BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.