Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G089200.3 | Wheat | nucleus | 89.97 | 88.64 |
| TraesCS3B01G104500.1 | Wheat | nucleus | 84.31 | 87.76 |
| HORVU3Hr1G015880.36 | Barley | cytosol, mitochondrion, nucleus | 86.62 | 81.28 |
| TraesCS3D01G099600.1 | Wheat | nucleus | 81.55 | 43.43 |
| Zm00001d024953_P024 | Maize | nucleus | 52.83 | 29.68 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 8.42 | 15.18 |
| Solyc02g050200.1.1 | Tomato | nucleus | 10.5 | 11.49 |
| KRH17731 | Soybean | mitochondrion | 9.57 | 7.82 |
| AT5G01630.1 | Thale cress | nucleus | 10.15 | 7.62 |
| AT4G00020.2 | Thale cress | nucleus | 10.15 | 7.41 |
| CDX80759 | Canola | nucleus | 9.34 | 7.32 |
| CDY64035 | Canola | nucleus | 8.65 | 7.09 |
| Bra037060.1-P | Field mustard | nucleus | 9.11 | 6.82 |
| CDY11187 | Canola | nucleus | 8.88 | 6.64 |
| GSMUA_Achr5P28060_001 | Banana | nucleus | 6.81 | 6.42 |
| Bra005674.1-P | Field mustard | nucleus | 7.73 | 6.32 |
| Solyc02g050210.1.1 | Tomato | cytosol | 0.12 | 0.28 |
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 0.0 | 0.0 |
| CDY08306 | Canola | nucleus | 0.0 | 0.0 |
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G089500.2 | EnsemblPlantsGene:TraesCS3D01G089500 | InterPro:BRCA2_repeat | InterPro:IPR002093 | PFAM:PF00634 | PFscan:PS50138 |
| SEG:seg | MapMan:13.3.6.4.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:45395094..45401136
Molecular Weight (calculated)
92568.1 Da
IEP (calculated)
8.023
GRAVY (calculated)
-0.504
Length
867 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRRWQVWGR PDGSQVWIPA PDPDAPPPPP AAAPPPPPGR AAGTAAASLE DAPVKGRGAA DGCRVESMAD LLVQARNKLL EGDGMAGATV DAGKGELFCT
101: ASGRPVSVSE RAIRRARALV GEEVEKAGIK RKQSFGDVSD VEGELREMDA PFRGNLGGVH NTAMPPLFQT GSGKAVLPGR NSIQKARAIL EDVDSAAGAV
201: QPMFRTGMGR PVPVNRTFID KARAVLEGQT AAEQGHSDES VDGMEQFPLF QTGSGRVVSV SSASVQKAKS VLKDNNTSEG RPVTISERSI ERSRAAANEG
301: DAEKSGHWDT GCQFPMFQTG LGKPVAASWS SVQKASAVLG EEKTKTTDSG HGDSSVCATT LQSETPRSVL MSSSLIMTDR SVTPNGDSAM QVTRIEKSQE
401: GGNHLPLFQT GLGRPIAISK SSVKRATAVL EPRNIAKELE DEAHLDGGHD TPMFKTGLGR SILASDELCI LEAEEAVKSV NNYDGEAFVE EAAFQAGIQK
501: FVPQNRSSSH KASMLLEQRN FTEKGYEDCG GQLPMFRTGS GKSVLISESS MQKAKAVLEE EVKINRDNHN LLNLDKNIPV FASPLKTSCA RTVIISSAGV
601: SRAATLLGLE ENTLSTQFFG HVGDKLGTKI NFERKNPEQR LGLASGPTEN QVHKEPHRPF ELSNNTVSDS GEHSIRFSTA GGRSMAIPSD ALQRARSLLG
701: ESDIVVSTNN IVGRPLASAC NVEMPNLTVA PKGGPDLSKI SRVNGKTELA TYSHQTMSDR KHTGSFENAV PAIPATNKQP NMFHVGSCSI SEIPKIPKPS
801: SMRLSETDNA SDTKDKTQRL HMPAGPLVDI SNFMGTHSGN IDHAVNDKRR IEGRNSASSF KRPRSSR
101: ASGRPVSVSE RAIRRARALV GEEVEKAGIK RKQSFGDVSD VEGELREMDA PFRGNLGGVH NTAMPPLFQT GSGKAVLPGR NSIQKARAIL EDVDSAAGAV
201: QPMFRTGMGR PVPVNRTFID KARAVLEGQT AAEQGHSDES VDGMEQFPLF QTGSGRVVSV SSASVQKAKS VLKDNNTSEG RPVTISERSI ERSRAAANEG
301: DAEKSGHWDT GCQFPMFQTG LGKPVAASWS SVQKASAVLG EEKTKTTDSG HGDSSVCATT LQSETPRSVL MSSSLIMTDR SVTPNGDSAM QVTRIEKSQE
401: GGNHLPLFQT GLGRPIAISK SSVKRATAVL EPRNIAKELE DEAHLDGGHD TPMFKTGLGR SILASDELCI LEAEEAVKSV NNYDGEAFVE EAAFQAGIQK
501: FVPQNRSSSH KASMLLEQRN FTEKGYEDCG GQLPMFRTGS GKSVLISESS MQKAKAVLEE EVKINRDNHN LLNLDKNIPV FASPLKTSCA RTVIISSAGV
601: SRAATLLGLE ENTLSTQFFG HVGDKLGTKI NFERKNPEQR LGLASGPTEN QVHKEPHRPF ELSNNTVSDS GEHSIRFSTA GGRSMAIPSD ALQRARSLLG
701: ESDIVVSTNN IVGRPLASAC NVEMPNLTVA PKGGPDLSKI SRVNGKTELA TYSHQTMSDR KHTGSFENAV PAIPATNKQP NMFHVGSCSI SEIPKIPKPS
801: SMRLSETDNA SDTKDKTQRL HMPAGPLVDI SNFMGTHSGN IDHAVNDKRR IEGRNSASSF KRPRSSR
0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
Arabidopsis Description
BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.