Factsheet for Bra037060.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
vacuole 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64035	Canola	nucleus	82.99	90.83
Bra005674.1-P	Field mustard	nucleus	56.13	61.32
VIT_08s0058g00500.t01	Wine grape	cytosol	26.68	56.49
Solyc02g050210.1.1	Tomato	cytosol	13.73	44.79
KRH17731	Soybean	mitochondrion	39.29	42.84
Os01t0164800-01	Rice	cytosol, mitochondrion	8.46	38.74
GSMUA_Achr5P28060_001	Banana	nucleus	30.4	38.3
Solyc02g050200.1.1	Tomato	nucleus	25.99	38.01
Zm00001d024953_P024	Maize	nucleus	33.85	25.41
TraesCS3A01G099300.4	Wheat	nucleus	31.95	23.37
TraesCS3B01G115500.3	Wheat	nucleus	32.21	22.94
TraesCS3D01G099600.1	Wheat	nucleus	32.21	22.91
HORVU3Hr1G017990.10	Barley	nucleus, plastid	32.12	22.25
Os01t0164900-01	Rice	cytosol, mitochondrion	7.94	19.13
TraesCS3B01G104500.1	Wheat	nucleus	6.99	9.72
TraesCS3D01G089500.2	Wheat	nucleus	6.82	9.11
TraesCS3A01G089200.3	Wheat	nucleus	6.74	8.86
HORVU3Hr1G015880.36	Barley	cytosol, mitochondrion, nucleus	6.91	8.66

Protein Annotations

Gene3D:1.20.120.610	MapMan:13.3.6.4.2	MapMan:14.3.2.1	Gene3D:2.40.50.140	MapMan:24.1.1.1.2	InterPro:ATPase_proteolipid_c-like_dom
InterPro:BRCA2	InterPro:BRCA2_OB_1	InterPro:BRCA2_hlx	InterPro:BRCA2_hlx_sf	InterPro:BRCA2_repeat	EnsemblPlantsGene:Bra037060
EnsemblPlants:Bra037060.1	EnsemblPlants:Bra037060.1-P	InterPro:F/V-ATP_Csub_sf	GO:GO:0000724	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006810	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015078	GO:GO:0015991	GO:GO:0016020
GO:GO:0016021	GO:GO:0033177	InterPro:IPR002093	UniProt:M4F7J9	InterPro:NA-bd_OB-fold	PFAM:PF00137
PFAM:PF00634	PFAM:PF09103	PFAM:PF09169	PFscan:PS50138	PANTHER:PTHR11289	SUPFAM:SSF50249
SUPFAM:SSF81333	SUPFAM:SSF81872	SUPFAM:SSF81878	TMHMM:TMhelix	UniParc:UPI0002547501	SEG:seg

Description

AT4G00020 (E=0.0) MEE43, EDA20, BRCA2(IV), BRCA2A | protein binding / single-stranded DNA binding

Coordinates

chrA05:-:9663974..9672768

Molecular Weight (calculated)

127916.0 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.321

Length

1158 amino acids

Sequence
(BLAST)

0001: MSTWQLLPDS SGDGFRWDAA GRILQSGKSD SPPTTSPPLP SMADLLLRGC SKLIEPEESK PTMFTTALGK SVALKDSSLS RAKSILSDSD DVALSRESGF
0101: GVPNSCFQTA SNKKVNVSSA GMARAKALLG LEEEDDFSVF KHVNHRLPSS HQQHGLRTPE TFGAEHRSVT PGGHNVSGKR CEILSSSPKV PQTKFQTAGG
0201: RSLSVSVEAL NRARSLLGDP ELGPFFDDVD HFVTPQKDKW IGGDIAHESN KHTSNSFISP LQSSSKQFRS VKLEDVASGV NLIKKFDAAV DETHGNTPLA
0301: SDKAVTNTMG TGFIPRSSQF GRQAHQPLVD ITNRNDIAHA NSNNRQESSQ KKRLGKTVSV PPFKRPRTSS FKTPLMKNDQ HPSNGFSVVS CDTQYSNRVL
0401: STRTEERSQR IYIKDYFGMR PRATTKMAVP EHVRRIKSSN ADKYAFGDVS SSSVVGAETF HQMLAESGAS LQCASREWVT NHYRWIVWKL ACYETYYPAK
0501: CRGNFLTITN VLQELRYRYE REVNHGHCSA IMRILSGDAP ASSMMVLCIS AINPETRETH GSDSGNNVKI ELTDGWYSIN AALDVMLRKQ LNAGKLFIGQ
0601: KLRILGAGLS GWSTPTSPLE AAISNTIYLL LHINGTYRAH WADRLGFCKE VGVPLALNCI KCNGGPVPKM LAGITRIYPI LYKEKLGEKK SVVRSERMEW
0701: RMIELHNQRQ VSIISCREQL LVTFMRSDLI EGLICEYQGG INGVDSQNDT DSKGAKLFKL LESAAEPDFL MADMSMEELN CFNRYKEKFE AAMEKKMEKS
0801: VAKALEDAGL GERDVTPFMR IRLVGLTSLS YDGHPNPKEA ILTIWNPTET QRTELTEGKI YAMKGLVPMN IDSETLYLHA KGSSSRLQPL SPKASERFQP
0901: FFNPRKSMSL LDLGEIPLGS EFDMAAYVVY VGNAYTDVDQ KKQWVFVTDG SLQYSDSGKI ANRLLAISFR TSSMDDLHSP LISHNLVGSV VGFCNLIKRA
1001: KDVENDMWVC EAMENSDYFL NADAACPSHL KTSNHRPTSA ESPTYRRCLL IISCTRSPAD RSFHEEILIT AAHATFYEFN TEISQWWSPC VLAGLSAGMA
1101: IGIVGDAGIS ECTTTKALCG MILILIFAKA LSLYGLIVGI ILSSRAGQAR VERTLKVS

Best Arabidopsis Sequence Match ( AT5G01630.1 )
(BLAST)

0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC

Arabidopsis Description

BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.