Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU5Hr1G040730.2 | |
| HORVU7Hr1G091450.2 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G104500.1 | Wheat | nucleus | 79.98 | 88.72 |
| TraesCS3D01G089500.2 | Wheat | nucleus | 81.28 | 86.62 |
| TraesCS3A01G089200.3 | Wheat | nucleus | 81.71 | 85.8 |
| HORVU3Hr1G017990.10 | Barley | nucleus, plastid | 75.43 | 41.69 |
| Zm00001d024953_P024 | Maize | nucleus | 50.0 | 29.94 |
| Os01t0164900-01 | Rice | cytosol, mitochondrion | 7.58 | 14.55 |
| Solyc02g050200.1.1 | Tomato | nucleus | 9.85 | 11.49 |
| AT5G01630.1 | Thale cress | nucleus | 9.42 | 7.53 |
| AT4G00020.2 | Thale cress | nucleus | 9.63 | 7.5 |
| KRH17731 | Soybean | mitochondrion | 8.44 | 7.34 |
| CDX80759 | Canola | nucleus | 8.66 | 7.23 |
| CDY64035 | Canola | nucleus | 8.23 | 7.18 |
| Bra037060.1-P | Field mustard | nucleus | 8.66 | 6.91 |
| CDY11187 | Canola | nucleus | 8.23 | 6.56 |
| Bra005674.1-P | Field mustard | nucleus | 7.25 | 6.32 |
| GSMUA_Achr5P28060_001 | Banana | nucleus | 5.95 | 5.98 |
| Solyc02g050210.1.1 | Tomato | cytosol | 0.11 | 0.28 |
| Os01t0164800-01 | Rice | cytosol, mitochondrion | 0.0 | 0.0 |
| CDY08306 | Canola | nucleus | 0.0 | 0.0 |
| VIT_08s0058g00500.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G015880.36 | EnsemblPlantsGene:HORVU3Hr1G015880 | GO:GO:0000724 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | InterPro:BRCA2_repeat | InterPro:IPR002093 |
| PFAM:PF00634 | PFscan:PS50138 | SEG:seg | UniParc:UPI000B482566 | UniProt:A0A287K819 | MapMan:13.3.6.4.2 |
Description
No Description!
Coordinates
chrchr3H:-:37936975..37942791
Molecular Weight (calculated)
98748.3 Da
IEP (calculated)
8.196
GRAVY (calculated)
-0.479
Length
924 amino acids
Sequence
(BLAST)
(BLAST)
001: AAWPSPFPRE FRPKSLSLSL FGPVAPPAIE REIPAEIPGE TPAAMPRRWQ VWGRPDGSQV WIPAPDPDAP PPPAAAPPLP APGRAAGIAA ASFERSETLG
101: QDAADGCRVE SMADLLVQAR SKLLEGDGMA GATGDAGKGE LFCTGSGRPV SLSERAIRRA RALVGEEVEK AGIKRKQPFG DVPDVEGGLR GMDAPFRGGV
201: HNTAMPPLFQ TGSGKAVLPG RDSIQKARVI LEDVDSAACA VQPTFRTGMG RAVPVNRAFI GKARAVLEGQ TAAEQGVDSM EQFPLFQTGS GRVVSVSSAS
301: IQKAKSVLKD NNTSEESFGR PNQSMMFQAG SGRQVTISER SIERSRAVLN EGDAEKSGHW DTGCQFPMFQ TVLGKPVAVS SSSAQKARAV LEEEKIKPTG
401: HGDSSVCATT LQSETPRSVL MSSSLIMTDR SVTPNGDSSM QVTRIEKNHE DGNHLPLFQT GLGRSIAISK SSVKRATAVL EPRNIAKELE DEAHLDGGHD
501: TPMFKTGLGR SILASDGCRN ELRSSEAEEA VKSVNNCNGE AFVEEAAFQA GIQKFVPQNR SSSHKASMLL EQRNFTGKDY GNQLPMFQTG SGKSVLISES
601: SVQKAKAVLE EEVKINRDNY NLLNTDKNIP VFASPLKTSC ARTVNISSAG VSRAATLLGL EENTLSTQFF GHVGDKLGTK IIFERKNPEQ RLDLASCPTE
701: NEVHKEPHRP FELSNNTVSE SGEHSIRFST VGGRSMAISS AALQRARSLL GESDLVVSTN NLEGHSLASA CNVEMPNSTV APKEGGPDLS KISTINGKTE
801: FATFSHQTMS CRKHTGSFGN APATPAKKYT NMFHVGSRPI SETPKTSKPS SMCLSETDNA NDTKGKTQRH HTPAGALVDI SNLMGAHSGN IDHAVNEKRR
901: IEGRNSASSF KRPRSSISFD LHPT
101: QDAADGCRVE SMADLLVQAR SKLLEGDGMA GATGDAGKGE LFCTGSGRPV SLSERAIRRA RALVGEEVEK AGIKRKQPFG DVPDVEGGLR GMDAPFRGGV
201: HNTAMPPLFQ TGSGKAVLPG RDSIQKARVI LEDVDSAACA VQPTFRTGMG RAVPVNRAFI GKARAVLEGQ TAAEQGVDSM EQFPLFQTGS GRVVSVSSAS
301: IQKAKSVLKD NNTSEESFGR PNQSMMFQAG SGRQVTISER SIERSRAVLN EGDAEKSGHW DTGCQFPMFQ TVLGKPVAVS SSSAQKARAV LEEEKIKPTG
401: HGDSSVCATT LQSETPRSVL MSSSLIMTDR SVTPNGDSSM QVTRIEKNHE DGNHLPLFQT GLGRSIAISK SSVKRATAVL EPRNIAKELE DEAHLDGGHD
501: TPMFKTGLGR SILASDGCRN ELRSSEAEEA VKSVNNCNGE AFVEEAAFQA GIQKFVPQNR SSSHKASMLL EQRNFTGKDY GNQLPMFQTG SGKSVLISES
601: SVQKAKAVLE EEVKINRDNY NLLNTDKNIP VFASPLKTSC ARTVNISSAG VSRAATLLGL EENTLSTQFF GHVGDKLGTK IIFERKNPEQ RLDLASCPTE
701: NEVHKEPHRP FELSNNTVSE SGEHSIRFST VGGRSMAISS AALQRARSLL GESDLVVSTN NLEGHSLASA CNVEMPNSTV APKEGGPDLS KISTINGKTE
801: FATFSHQTMS CRKHTGSFGN APATPAKKYT NMFHVGSRPI SETPKTSKPS SMCLSETDNA NDTKGKTQRH HTPAGALVDI SNLMGAHSGN IDHAVNEKRR
901: IEGRNSASSF KRPRSSISFD LHPT
0001: MSTWHLFSDS SGDGFRWEVA GRILQSVSDS TPTKALESTA PLPSMADLLL QGCSKLIERE ESMPGEIPMF RTGLGKSVVL KESSIAKAKS ILAENVAYSD
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
0101: LQNTNCSIPQ TRQVDTAETM PMFRTALGKT VPLKESSIAK PLSILGSDMI IDSDNVLPRE SGFGVPNSLF QTASNKKVNV SSAGLARAKA LLGLEEDDLN
0201: GFNHVNQSSS SLQQHGWSGL KTHEEFDATV VKHHSGTPGQ YENYVSGKRS EILNPSLKVP PTKFQTAGGK SLSVSAEALK RARNLLGDPE LGSFFDDVAG
0301: GDQFFTPQKD ERLSDIAINN GSVNTGYIAH EEKTSNKHTS NSFVSPLHSS SKQFRSVNLE NLASGGNLIK KFDTAVDETN CALNISKPAT HGLSNNRPLA
0401: SDMAVNNSKG NGFIPRARQL GRPADQPLVD ITNRRDTAYA NNKQDSTQKK RLGKTVSVSP FKRPRISSFK TPLKKNAQQA SSGLSVVSCD TLTSKKVLST
0501: RYPEKSPRVY IKEFFGMHPT ATTRMDYVPD HVRRIKSSNA DKYVFCDESS SNKVGAETFL QMLAESGASL QHASRKWVTN HYRWIVWKLA CYDIYYPAKC
0601: RGNFLTITNV LEELKYRYER EVNHGHCSAI KRILSGDAPA SSMMVLCISA INPRTDNGSQ EAHCSDNCSN VKVELTDGWY SMNAALDVVL TKQLNAGKLF
0701: VGQKLRILGA GLSGWATPTS PLEAVISSTI CLLLNINGTY RAHWADRLGF CKEIGVPLAF NCIKCNGGPV PKTLAGITRI YPILYKERLG EKKSIVRSER
0801: IESRIIQLHN QRRSALVEGI MCEYQRGING VHSQNDTDSE EGAKVFKLLE TAAEPELLMA EMSLEQLTSF TTYKAKFEAA KQMQMEKSVA KALEDAGLGE
0901: RNVTPFMRIR LVGLTSLSNE GEHNPKEGIV TIWDPTERQR TELTEGKIYI MKGLVPMNSD SETLYLHARG SSSRWQPLSP KDSENFQPFF NPRKPISLSN
1001: LGEIPLSSEF DIAAYVVYVG DAYTDVLQKK QWVFVTDGST QHSGEISNSL LAISFSTPFM DDSSVSHISH NLVGSVVGFC NLIKRAKDAT NEMWVAETTE
1101: NSVYFINAEA AYSSHLKTRS AHIQTWAKLY SSKSVIHELR QRVLFIIGAC KSPSC
Arabidopsis Description
BRCA2BProtein BREAST CANCER SUSCEPTIBILITY 2 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q7Y1C4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.