Factsheet for TraesCS7D01G381300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G089200.3
TraesCS3A01G099300.4
TraesCS3B01G104500.1
TraesCS3B01G115500.3
TraesCS3D01G089500.2
TraesCS3D01G099600.1
TraesCS5A01G133000.1
TraesCS5A01G174300.1
TraesCS5B01G131900.1
TraesCS5B01G171700.1
TraesCS5D01G141200.1
TraesCS5D01G178900.1
TraesCS6A01G321200.1
TraesCS6B01G351900.1
TraesCS6D01G300900.1
TraesCS7A01G384800.1
TraesCS7B01G287700.1
TraesCS7D01G381300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20850.1	TraesCS6A01G321200.1	AT3G19210.1	17227544
AT5G20850.1	TraesCS6B01G351900.1	AT3G19210.1	17227544
AT5G20850.1	TraesCS6D01G300900.1	AT3G19210.1	17227544
AT5G20850.1	TraesCS6A01G321200.1	AT3G19210.1	18430956
AT5G20850.1	TraesCS6B01G351900.1	AT3G19210.1	18430956
AT5G20850.1	TraesCS6D01G300900.1	AT3G19210.1	18430956
AT5G20850.1	TraesCS5A01G133000.1	AT3G22880.1	15014444
AT5G20850.1	TraesCS5B01G131900.1	AT3G22880.1	15014444
AT5G20850.1	TraesCS5D01G141200.1	AT3G22880.1	15014444
AT5G20850.1	TraesCS5A01G133000.1	AT3G22880.1	16415210
AT5G20850.1	TraesCS5B01G131900.1	AT3G22880.1	16415210
AT5G20850.1	TraesCS5D01G141200.1	AT3G22880.1	16415210
AT5G20850.1	TraesCS5A01G174300.1	AT4G29170.1	17937504
AT5G20850.1	TraesCS5B01G171700.1	AT4G29170.1	17937504
AT5G20850.1	TraesCS5D01G178900.1	AT4G29170.1	17937504
AT5G20850.1	TraesCS3A01G089200.3	AT5G01630.1	15014444
AT5G20850.1	TraesCS3A01G099300.4	AT5G01630.1	15014444
AT5G20850.1	TraesCS3B01G104500.1	AT5G01630.1	15014444
AT5G20850.1	TraesCS3B01G115500.3	AT5G01630.1	15014444
AT5G20850.1	TraesCS3D01G089500.2	AT5G01630.1	15014444
AT5G20850.1	TraesCS3D01G099600.1	AT5G01630.1	15014444
AT5G20850.1	TraesCS3A01G089200.3	AT5G01630.1	16415210
AT5G20850.1	TraesCS3A01G099300.4	AT5G01630.1	16415210
AT5G20850.1	TraesCS3B01G104500.1	AT5G01630.1	16415210
AT5G20850.1	TraesCS3B01G115500.3	AT5G01630.1	16415210
AT5G20850.1	TraesCS3D01G089500.2	AT5G01630.1	16415210
AT5G20850.1	TraesCS3D01G099600.1	AT5G01630.1	16415210
AT5G20850.1	TraesCS7A01G384800.1	AT5G20850.1	15014444
AT5G20850.1	TraesCS7B01G287700.1	AT5G20850.1	15014444
AT5G20850.1	TraesCS7D01G381300.1	AT5G20850.1	15014444

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G287700.1	Wheat	cytosol	99.42	99.13
TraesCS7A01G384800.1	Wheat	cytosol	99.42	99.13
Os12t0497300-01	Rice	cytosol	93.86	94.13
Zm00001d041757_P001	Maize	cytosol	93.27	93.82
HORVU7Hr1G091450.2	Barley	cytosol, nucleus	98.54	91.33
OQU79150	Sorghum	cytosol	93.57	90.91
VIT_11s0016g00340.t01	Wine grape	cytosol	88.3	89.61
Solyc07g017540.2.1	Tomato	cytosol	88.3	88.3
Bra006580.1-P	Field mustard	cytosol	86.55	86.55
AT5G20850.1	Thale cress	cytosol	86.26	86.26
KRH02540	Soybean	cytosol	86.26	86.01
Bra002334.1-P	Field mustard	cytosol	85.96	85.96
KRH19405	Soybean	cytosol	86.26	85.76
GSMUA_Achr10P...	Banana	cytosol, mitochondrion, nucleus, plastid	28.07	85.71
CDY16571	Canola	cytosol	79.53	85.27
CDX92430	Canola	cytosol	79.53	85.27
CDX88837	Canola	cytosol	80.41	84.88
CDX70947	Canola	cytosol	80.41	84.88
TraesCS5D01G141200.1	Wheat	nucleus	52.05	51.74
TraesCS2D01G214900.1	Wheat	cytosol	23.98	28.28
TraesCS6D01G182800.1	Wheat	cytosol, nucleus, plastid	20.76	25.0
TraesCS1D01G059600.2	Wheat	cytosol, peroxisome, plastid	23.39	21.56

Protein Annotations

Gene3D:1.10.150.20	MapMan:14.3.2.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:DNA_recomb/repair_Rad51	InterPro:DNA_recomb/repair_Rad51_C
InterPro:DNA_recomb/repair_RecA-like	InterPro:DNA_repair_Rad51/TF_NusA_a-hlx	GO:GO:0000150	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003690	GO:GO:0003697	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005694
GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006302	GO:GO:0006355	GO:GO:0006950
GO:GO:0007049	GO:GO:0008094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009987	GO:GO:0010332	GO:GO:0016787	GO:GO:0045003	GO:GO:1990426	InterPro:IPR020587
InterPro:IPR020588	InterPro:P-loop_NTPase	PFAM:PF08423	PFAM:PF14520	PIRSF:PIRSF005856	PFscan:PS50162
PFscan:PS50163	PANTHER:PTHR22942	PANTHER:PTHR22942:SF45	InterPro:Rad51_DMC1_RadA	InterPro:RecA_ATP-bd	InterPro:RecA_monomer-monomer_interface
SMART:SM00382	SUPFAM:SSF47794	SUPFAM:SSF52540	TIGRFAMs:TIGR02239	EnsemblPlantsGene:TraesCS7D01G381300	EnsemblPlants:TraesCS7D01G381300.1
TIGR:cd01123	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:495423447..495427459

Molecular Weight (calculated)

36749.1 Da

IEP (calculated)

6.180

GRAVY (calculated)

-0.076

Length

342 amino acids

Sequence
(BLAST)

001: MSSSAAHQKA AAAAPVEEEA GEHGPFPIEQ LQASGIAAVD VKKLKDAGLC TVESVAYSPR KDLLQIKGIS EAKVDKIIEA ASKLVPLGFT SATQLHAQRL
101: EIIQVTTGSR ELDKILEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP LDQGGGEGKA LYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMVETRFA LMVIDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVISN QVVAQVDGGA MFAGPQIKPI GGNIMAHAST
301: TRLYLRKGRA EERICKVVSS PCLAEAEARF QISPEGVTDV KD

Best Arabidopsis Sequence Match ( AT5G20850.1 )
(BLAST)

001: MTTMEQRRNQ NAVQQQDDEE TQHGPFPVEQ LQAAGIASVD VKKLRDAGLC TVEGVAYTPR KDLLQIKGIS DAKVDKIVEA ASKLVPLGFT SASQLHAQRQ
101: EIIQITSGSR ELDKVLEGGI ETGSITELYG EFRSGKTQLC HTLCVTCQLP MDQGGGEGKA MYIDAEGTFR PQRLLQIADR FGLNGADVLE NVAYARAYNT
201: DHQSRLLLEA ASMMIETRFA LLIVDSATAL YRTDFSGRGE LSARQMHLAK FLRSLQKLAD EFGVAVVITN QVVAQVDGSA LFAGPQFKPI GGNIMAHATT
301: TRLALRKGRA EERICKVISS PCLPEAEARF QISTEGVTDC KD

Arabidopsis Description

RAD51DNA repair protein RAD51 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P94102]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.