Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G384800.1 | |
| TraesCS7B01G287700.1 | |
| TraesCS7D01G381300.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G321200.1 | Wheat | nucleus | 94.62 | 97.53 |
| HORVU6Hr1G078680.2 | Barley | nucleus | 93.32 | 95.8 |
| TraesCS6D01G300900.1 | Wheat | cytosol | 94.22 | 89.24 |
| EES07568 | Sorghum | nucleus | 81.66 | 84.43 |
| Zm00001d018151_P003 | Maize | nucleus | 79.96 | 82.85 |
| HORVU1Hr1G071540.2 | Barley | nucleus | 22.43 | 82.42 |
| HORVU7Hr1G119270.3 | Barley | nucleus | 22.93 | 82.14 |
| Os02t0762800-00 | Rice | nucleus | 80.16 | 82.04 |
| GSMUA_Achr5P24600_001 | Banana | nucleus | 63.51 | 68.2 |
| KRH77966 | Soybean | nucleus | 59.22 | 66.0 |
| AT3G19210.1 | Thale cress | nucleus | 58.23 | 64.18 |
| CDX92308 | Canola | nucleus | 58.13 | 64.0 |
| Bra022395.1-P | Field mustard | nucleus | 58.13 | 63.86 |
| CDX99258 | Canola | nucleus | 57.63 | 63.73 |
| Solyc04g056400.2.1 | Tomato | cytosol, nucleus, plastid | 23.13 | 62.87 |
| Solyc04g056410.2.1 | Tomato | nucleus | 36.49 | 62.35 |
| VIT_03s0063g00580.t01 | Wine grape | nucleus | 57.63 | 59.1 |
| TraesCS6B01G146000.1 | Wheat | endoplasmic reticulum, golgi | 7.48 | 22.39 |
| TraesCS2B01G222000.1 | Wheat | plastid | 18.34 | 21.22 |
| TraesCS3B01G097000.1 | Wheat | nucleus | 19.54 | 15.35 |
| TraesCS1B01G161400.5 | Wheat | nucleus | 21.24 | 13.42 |
| TraesCS2B01G208700.1 | Wheat | cytosol | 11.76 | 12.88 |
| TraesCS4B01G280600.1 | Wheat | nucleus | 11.86 | 12.46 |
| TraesCS2B01G164300.3 | Wheat | nucleus | 11.66 | 12.24 |
| TraesCS3B01G251000.1 | Wheat | nucleus | 12.36 | 11.69 |
| TraesCS2B01G105400.1 | Wheat | nucleus | 12.46 | 9.97 |
| TraesCS1B01G256700.1 | Wheat | mitochondrion, nucleus | 13.66 | 9.18 |
| TraesCS1B01G476500.1 | Wheat | mitochondrion | 18.54 | 8.99 |
Protein Annotations
| Gene3D:1.20.120.850 | MapMan:12.4.1.3.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF889 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6B01G351900 | EnsemblPlants:TraesCS6B01G351900.1 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg |
Description
No Description!
Coordinates
chr6B:+:617170520..617179696
Molecular Weight (calculated)
111297.0 Da
IEP (calculated)
6.864
GRAVY (calculated)
-0.558
Length
1003 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPSRSKRDRR GSDSDDEEEE EVVTLSSDPD ESESEAERGV EAADDDDEYV ADSSDAGGVE DESEEGGDSD DGGGDGGRPV RGGRRGAAEP DEERKSQNVD
0101: ALVRGNLVVR RQPLIPRILS VSDAAAIARK PFKPPCGNGY SENSELLARR LSARKRFVPW GSVQPFAVPN NLQQLPTIAS DNSSEKEEPL PSGIEPLILW
0201: QPEECDKENN NFTAIEVDHL LVRYLRPHQR EGVQFMFDCV SGLLSDDGIA GCILADDMGL GKTLQSITLL YTLLAQGFEG KPMVKRAVIV TPTSLVSNWE
0301: SEISKWLKGK VHLLALCEST RADVLSGIGS FLKPLSRLQV LIVSYETFRM HSSKFEIPGS CDLLICDEAH RLKNDQTLTN KALAALPCTR RILLSGTPMQ
0401: NDLEEFFSMV NFTNPGVLGD AAYFRRYYEA PIIRGREPAA TAEEKKLGSE RSGELSAKVN QFILRRTNAL LSNHLPPKIV EVVCCKLTPL QMTLYNHFTH
0501: SKNVKRLISE EAKGSKVLAY ITALKKLCNH PKLIYDTIKS SKSGGSGFDD CLRFFPPELF QGRSGSWTGG GGMWVELSGK MHVLARLLGH LRLKTDDRIV
0601: LVSNYTQTLD LFAQLCRERR YPYVRLDGST SINKRQKLVN QFNDLSRDEF AFLLSSKAGG CGLNLVGGNR LVLFDPDWNP ANDKQAAARV WRDGQKKRVY
0701: IYRFLSTGTI EEKVYQRQMA KEGLQRVIQQ EQADDKMQDQ GNSLSTEDLR DLFTLHDQVR SEIHENLKCG RCKKDHCMPL DGNGLDLDAA KPDTVSTSKE
0801: KLYTDIGGFR EISGCVQKMN CSNQQIEQPS EEDLRSWGHH SDPSTVPDTI LQCSAGEEVS FVFTNQVDGK LVPVESMVRS TAHQPNGVTA SGEKEAVKIN
0901: SPRKPGRQSL LGKNLKMMGF NLKNSSLKSP TKSKGTSPVC LQPFRKTNPS SDHQHSSLKS PTKSKGTYPV CLQPLKKNNP SSDHQPQTKR LHVASDISDD
1001: DFV
0101: ALVRGNLVVR RQPLIPRILS VSDAAAIARK PFKPPCGNGY SENSELLARR LSARKRFVPW GSVQPFAVPN NLQQLPTIAS DNSSEKEEPL PSGIEPLILW
0201: QPEECDKENN NFTAIEVDHL LVRYLRPHQR EGVQFMFDCV SGLLSDDGIA GCILADDMGL GKTLQSITLL YTLLAQGFEG KPMVKRAVIV TPTSLVSNWE
0301: SEISKWLKGK VHLLALCEST RADVLSGIGS FLKPLSRLQV LIVSYETFRM HSSKFEIPGS CDLLICDEAH RLKNDQTLTN KALAALPCTR RILLSGTPMQ
0401: NDLEEFFSMV NFTNPGVLGD AAYFRRYYEA PIIRGREPAA TAEEKKLGSE RSGELSAKVN QFILRRTNAL LSNHLPPKIV EVVCCKLTPL QMTLYNHFTH
0501: SKNVKRLISE EAKGSKVLAY ITALKKLCNH PKLIYDTIKS SKSGGSGFDD CLRFFPPELF QGRSGSWTGG GGMWVELSGK MHVLARLLGH LRLKTDDRIV
0601: LVSNYTQTLD LFAQLCRERR YPYVRLDGST SINKRQKLVN QFNDLSRDEF AFLLSSKAGG CGLNLVGGNR LVLFDPDWNP ANDKQAAARV WRDGQKKRVY
0701: IYRFLSTGTI EEKVYQRQMA KEGLQRVIQQ EQADDKMQDQ GNSLSTEDLR DLFTLHDQVR SEIHENLKCG RCKKDHCMPL DGNGLDLDAA KPDTVSTSKE
0801: KLYTDIGGFR EISGCVQKMN CSNQQIEQPS EEDLRSWGHH SDPSTVPDTI LQCSAGEEVS FVFTNQVDGK LVPVESMVRS TAHQPNGVTA SGEKEAVKIN
0901: SPRKPGRQSL LGKNLKMMGF NLKNSSLKSP TKSKGTSPVC LQPFRKTNPS SDHQHSSLKS PTKSKGTYPV CLQPLKKNNP SSDHQPQTKR LHVASDISDD
1001: DFV
001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV
Arabidopsis Description
CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.