Factsheet for Zm00001d018151_P003

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d021898_P001
Zm00001d041757_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19210.1	Zm00001d021898_P001	AT5G20850.1	17227544
AT3G19210.1	Zm00001d041757_P001	AT5G20850.1	17227544
AT3G19210.1	Zm00001d021898_P001	AT5G20850.1	18430956
AT3G19210.1	Zm00001d041757_P001	AT5G20850.1	18430956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07568	Sorghum	nucleus	95.04	94.85
TraesCS6A01G321200.1	Wheat	nucleus	82.95	82.53
HORVU6Hr1G078680.2	Barley	nucleus	82.44	81.68
Os02t0762800-00	Rice	nucleus	82.64	81.63
TraesCS6B01G351900.1	Wheat	nucleus	82.85	79.96
HORVU1Hr1G071540.2	Barley	nucleus	21.9	77.66
HORVU7Hr1G119270.3	Barley	nucleus	22.31	77.14
TraesCS6D01G300900.1	Wheat	cytosol	82.64	75.54
GSMUA_Achr5P24600_001	Banana	nucleus	65.08	67.45
KRH77966	Soybean	nucleus	61.05	65.67
AT3G19210.1	Thale cress	nucleus	60.85	64.73
CDX92308	Canola	nucleus	60.85	64.65
CDX99258	Canola	nucleus	60.43	64.5
Bra022395.1-P	Field mustard	nucleus	60.64	64.29
Solyc04g056410.2.1	Tomato	nucleus	38.12	62.86
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	23.76	62.33
VIT_03s0063g00580.t01	Wine grape	nucleus	59.81	59.2
Zm00001d013828_P002	Maize	plastid	19.11	21.05
Zm00001d002950_P002	Maize	nucleus	18.39	16.42
Zm00001d040203_P003	Maize	cytosol	19.42	14.96
Zm00001d032801_P005	Maize	nucleus	20.87	13.61
Zm00001d024677_P003	Maize	cytosol	12.29	12.53
Zm00001d049605_P037	Maize	cytosol	12.6	12.49
Zm00001d047708_P001	Maize	cytosol	2.07	11.63
Zm00001d051324_P001	Maize	nucleus	13.02	9.42
Zm00001d039160_P031	Maize	cytosol, mitochondrion, nucleus, plasma membrane	19.32	9.15
Zm00001d038113_P001	Maize	mitochondrion, nucleus	13.33	8.99
Zm00001d022576_P001	Maize	golgi, nucleus, plasma membrane	11.67	8.47

Protein Annotations

Gene3D:1.20.120.850	EntrezGene:103627774	MapMan:12.4.1.3.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	UniProt:A0A1D6HL62
ProteinID:AQK75163.1	GO:GO:0000166	GO:GO:0000724	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0006139	GO:GO:0006259	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628
GO:GO:0009987	GO:GO:0010332	GO:GO:0045003	GO:GO:0051701	GO:GO:0071248	GO:GO:0071480
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF889
SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI0004DEA431
EnsemblPlantsGene:Zm00001d018151	EnsemblPlants:Zm00001d018151_P003	EnsemblPlants:Zm00001d018151_T003	SEG:seg	:	:

Description

Protein CHROMATIN REMODELING 25

Coordinates

chr5:-:215569988..215588200

Molecular Weight (calculated)

107385.0 Da

IEP (calculated)

6.850

GRAVY (calculated)

-0.460

Length

968 amino acids

Sequence
(BLAST)

001: MPSRSQYDRR GSDGDEDEII SVPSDLEESE SEANRGAEAD DDEYVGESSD ASGGDEAEEG GSSDCGEGWD GDDHGGNVRR PLRGLQRGVA APDKEMKSQN
101: VDALVRGNLV VRRQPLIPRI LSVSDAAAIV RKPFKPPCQN GYSDSNEQLA RRLSARKRFV PWGSTQTFAI NIIHHLPQSP VVASDSSSEK EEPLPPGIEP
201: LILWQRDECE KENCNSASIE VDHLLVRYLR PHQREGVQFM FDCVSGSLSA DGISGCILAD DMGLGKTLQS ITLLYTLLCQ GFDDKPMVKR AVIVTPTSLV
301: SNWESEIIKW LKGRVQVLAL CESTRADVLS GIESFLKPLS RLQVLIISYE TFRMHSSKFE RPGSCDLLIC DEAHRLKNDQ TLTNKALAAL PCTRRILLSG
401: TPMQNDLEEF FSMVNFTNPG VLGDASYFRR YYEAPIICGR EPTASAEEKK LGSERSAELS AKVNQFILRR TNALLSNHLP PKIIEVVCCK LTPLQTTLYN
501: HFIHSKNIKR LISEETKQSK ILAYITALKK LCNHPKLIYD TIKSNNSGVS GFDDCLHFFP PDLFSGRSGS WTGGGGMWVE LSGKMHVLAR LLGHLRQKTD
601: DRIVLVSNYT QTLDLFVQLC RERRYPYVRL DGSTSINKRQ KLVNQFNDLS RDEFVFLLSS KAGGCGLNLV GGNRLVLFDP DWNPANDKQA AARVWRDGQK
701: KRVYIYRFLS TGTIEEKVYQ RQMSKEGLQK VIQQEQADNK MQGNSLSTED LRDLFIFHEH VRSEIHKNLK CSRCDKDGDP ALDGTGFAAT GHKASIPGVQ
801: DYADIGGFGE ISGCLQKMNS THQQIGRPTE EDLGSWGHHC DPSTVPDTIL QCSAGEEVSF VFTNQVDGKL VPVESMVRSA AHQQNGIAAT GEKGVQIPNS
901: PSKPGKQSLN GKNLKMGFHL KNSSLKCSTK SRPSPNCLQG LMKTSPFLDQ PQIKKLHVAS DISDDDFV

Best Arabidopsis Sequence Match ( AT3G19210.1 )
(BLAST)

001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV

Arabidopsis Description

CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.