Factsheet for Zm00001d013828_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91354	Sorghum	plastid	94.08	93.13
Os05t0247900-01	Rice	plastid	78.5	80.61
TraesCS2A01G185300.1	Wheat	plastid	79.29	80.39
TraesCS2D01G202400.1	Wheat	plastid	79.07	80.16
TraesCS2B01G222000.1	Wheat	plastid	78.84	79.93
HORVU2Hr1G037590.4	Barley	plastid	79.52	79.7
GSMUA_Achr7P00330_001	Banana	plastid	64.85	65.59
VIT_12s0028g03440.t01	Wine grape	plastid	62.12	62.47
KRH25617	Soybean	nucleus	61.32	61.95
PGSC0003DMT400082782	Potato	plastid	61.21	60.59
Solyc07g053870.2.1	Tomato	plastid	60.3	59.75
AT1G03750.1	Thale cress	plastid	58.48	59.63
CDY32510	Canola	mitochondrion, nucleus	58.7	32.13
CDY37413	Canola	mitochondrion, nucleus	58.48	32.08
Bra032544.1-P	Field mustard	nucleus	58.82	31.47
Zm00001d018151_P003	Maize	nucleus	21.05	19.11
Zm00001d040203_P003	Maize	cytosol	23.78	16.63
Zm00001d002950_P002	Maize	nucleus	19.68	15.96
Zm00001d032801_P005	Maize	nucleus	20.48	12.13
Zm00001d024677_P003	Maize	cytosol	12.97	12.0
Zm00001d049605_P037	Maize	cytosol	12.97	11.67
Zm00001d047708_P001	Maize	cytosol	2.16	11.05
Zm00001d039160_P031	Maize	cytosol, mitochondrion, nucleus, plasma membrane	21.84	9.39
Zm00001d022576_P001	Maize	golgi, nucleus, plasma membrane	13.88	9.15
Zm00001d051324_P001	Maize	nucleus	13.2	8.68
Zm00001d038113_P001	Maize	mitochondrion, nucleus	14.11	8.64

Protein Annotations

EntrezGene:100502292	MapMan:12.4.1.4.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	UniProt:A0A1D6GMG5	ProteinID:AQK64474.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF804
SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI0004DEB156
EnsemblPlantsGene:Zm00001d013828	EnsemblPlants:Zm00001d013828_P002	EnsemblPlants:Zm00001d013828_T002	SEG:seg	:	:

Description

Switch 2

Coordinates

chr5:+:21546382..21565664

Molecular Weight (calculated)

99641.3 Da

IEP (calculated)

8.465

GRAVY (calculated)

-0.501

Length

879 amino acids

Sequence
(BLAST)

001: MSLNRLKETL HACSSSSSEP RTQPRSPQHP ARLPRRPPKT SLSQQLLRLE AAASSSSFFS SRPLQLPPAP RPPIEKPRED VEPPSSEDED ERKSRPIIRR
101: CLHPPPAAAL ESRGPYEPLV LSLPGEHPVV QVPPSINCRL LAHQRDGVRF LYNLYRNNHG GVLGDDMGLG KTIQTIAFLS SVIGKGNGHG QSTNKGKMTG
201: PVLILCPTSV IRNWENEFSE WAEFSVAVYH GPNRDLVLGK IENQGLEVLI TSFDTFRIHD KVLCGISWEL VVVDEAHRLK NEKSKLYTAC LGITTQKRFG
301: LTGTIMQNKI MELFNLFDWV VPGCLGDREH FRAYYDEPLK QGQRLSAPER FVQVADARKK HLVSILREFL LRRTKEETIG HLMLGKEDNI VFCKMSDVQK
401: RVYRRMLQQP DIQILINKDV RCSCGSPLPQ VECCKRTEPD GVIWSYLHRE NPEGCSICPF CLVLPFLVKL QQISNHLELI KPNPKDELEK QKKDAELAAA
501: VFGADIDLVG GTAKSENFMG LSDAENCGKM RALERLLSLW TGQGDKILLF SYSVRMLDIL EKFLIRKGYC FSRFDGTTPM NARQSLVDEF NRSPSKQVFL
601: ISTRAGNLGV NLVSANRVVI FDPSWNPAQD LQAQDRSFRY GQRRHVTVFR LLGAGSLEEL IYSRQIYKQQ LSNIAVSGKI ERRYFEGVQD DKKFQGELFG
701: ICNLFRDLSD KLFTSEIIEM HGEHGKSSAT EATGIREIVD TDLFGSQENR KSSTATTHTD DQKLVDFGIV YAHRNEDVVN MRTDGREKGG ADETVQSSLE
801: ELLSKNETKH TAMEKSYSSE EKREVARSYS LEQKKKEFSC IASFMGMDDL EFSKWLLSAS PHQRSEVLQD YRRKKKNQK

Best Arabidopsis Sequence Match ( AT1G03750.1 )
(BLAST)

001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK

Arabidopsis Description

SWI2Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.