Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- golgi 1
- mitochondrion 1
- plasma membrane 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047708_P001 | Maize | cytosol | 11.84 | 91.86 |
| KXG37026 | Sorghum | nucleus | 81.56 | 88.46 |
| TraesCS2B01G105400.1 | Wheat | nucleus | 58.85 | 62.6 |
| TraesCS2A01G089500.1 | Wheat | plastid | 58.77 | 62.17 |
| TraesCS2D01G087600.1 | Wheat | nucleus | 58.47 | 62.1 |
| HORVU2Hr1G014660.2 | Barley | nucleus | 58.62 | 61.87 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 36.81 | 45.46 |
| VIT_13s0067g01950.t01 | Wine grape | nucleus | 32.01 | 33.65 |
| AT3G42670.4 | Thale cress | nucleus | 31.71 | 33.62 |
| KRG97679 | Soybean | nucleus | 31.11 | 33.6 |
| Solyc06g050510.2.1 | Tomato | nucleus | 32.38 | 33.57 |
| PGSC0003DMT400061540 | Potato | nucleus | 32.08 | 33.28 |
| AT5G20420.1 | Thale cress | cytosol | 30.96 | 32.75 |
| Bra021058.1-P | Field mustard | nucleus | 31.18 | 32.73 |
| CDY56857 | Canola | cytosol | 30.58 | 32.25 |
| CDX92463 | Canola | nucleus | 30.51 | 32.17 |
| KRG88505 | Soybean | endoplasmic reticulum, nucleus | 28.94 | 32.03 |
| Bra002302.1-P | Field mustard | cytosol | 29.91 | 32.02 |
| KRH73247 | Soybean | nucleus | 31.33 | 31.91 |
| Zm00001d024677_P003 | Maize | cytosol | 16.12 | 22.63 |
| Zm00001d049605_P037 | Maize | cytosol | 16.27 | 22.21 |
| Zm00001d051324_P001 | Maize | nucleus | 18.37 | 18.32 |
| Zm00001d038113_P001 | Maize | mitochondrion, nucleus | 18.74 | 17.42 |
| Zm00001d013828_P002 | Maize | plastid | 9.15 | 13.88 |
| Os04t0692750-01 | Rice | cytosol | 9.82 | 13.27 |
| Zm00001d002950_P002 | Maize | nucleus | 9.67 | 11.9 |
| Zm00001d018151_P003 | Maize | nucleus | 8.47 | 11.67 |
| Zm00001d032801_P005 | Maize | nucleus | 12.89 | 11.59 |
| Zm00001d040203_P003 | Maize | cytosol | 10.57 | 11.22 |
| Zm00001d039160_P031 | Maize | cytosol, mitochondrion, nucleus, plasma membrane | 10.12 | 6.6 |
| Os04t0692700-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:103633601 | MapMan:12.5.1.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | UniProt:A0A1D6IP58 | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | ProteinID:ONM61040.1 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF792 | SMART:SM00487 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI0008459967 | EnsemblPlantsGene:Zm00001d022576 |
| EnsemblPlants:Zm00001d022576_P001 | EnsemblPlants:Zm00001d022576_T001 | SEG:seg | : | : | : |
Description
SNF2 domain-containing protein CLASSY 1
Coordinates
chr7:+:180275715..180280398
Molecular Weight (calculated)
150937.0 Da
IEP (calculated)
8.047
GRAVY (calculated)
-0.345
Length
1334 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMIKKKSGRC HLLAGHLELE DLTVDSTPLP FLPQGPNGQP IFFTVQRPGI LRQPPAAGRR PPHCPSTAAV QSIVFLLLVS GTFVCVHVPQ VILLSTWSRD
0101: PQATTATPSL QSVSDSFSTC ISCASGQKLR IYPLLAAFEA FHNGSWHGAN SIMIRDGGLL VKFVSSGYAV AVQHDIDGSY LRVRSRKATC SDCSHVLKPG
0201: ADVCVWQAVY RGETKDSVLL CCRDARLIKI KRNHQSDRCL CLFAVIFYKD QCPGSKEKVI SGTIADVVTI DDICILQNLQ PEELQDGSVR WNSAVDCFHH
0301: NRSKLLSARF SLEVAYLIVL SSLRRMEFNI KMVDGNIIYQ IIKGDQARDS IDSMSIPPGF GKNMDIISFK PRGEALRPIT RTVPVTQVEE GNLTEDGCIA
0401: VKGESDSAQD VEILYAHVDI RRSKRMKTQP DRFTSYDARN FNRTYNKKEA DGPSTKYEDS ESGLSCDSSE QRESSDEEAL ENPRSMAAEH KYPVKRNQCS
0501: LPVKEKQISM EIKKNTTDQG CSDSYIPHTP AKNTERPRFR LKPFASSRSL DGNSEPAFCQ KRGRKRKKHM CQIEYKRMID QCIGNIQCEV ERDSDFKFGD
0601: QILDGCVRAY QEVDFTWPSS ADSQEEKDEL DELWKEMDYA LATVAILEQK QMTDSEVVHE SNTDLGKGGE HCHHDCMLDE QLGLTCRLCN VVCIEAKDIF
0701: PPMFTGKDHE RPERNHFGQD GHVLDLSFFE ICAPEFSKIK ESGNVWASIT DLEPKLLAHQ RKAFEFIWKN LAGSLQLEEM DGSTSRGGCV VAHTPGAGKT
0801: LLLISFLVSY LKVHPRSRPL VLTPKAAIHT WRTEFQKWGI LLPLHVLHHS NRTSKLMGGL SSKLQAVLKS FHQPSWKTMR IMHCLDKLCK WHEEPSILLM
0901: TYSSFLSLTK EDSKLRHQAF ITKVLMNNPG LLILDEGHNP RSNKSKLRKL LMKVKTEFRI LLSGTVFQNN FEEYFNTLSL ARPRFVNDVM TTLVTESEKR
1001: TRSRTGKHQE ALARHVFVER VGHKIESSSK HDRMDGISLL NELTQGFIDS FEGTKLNILP GIRVYTLFMK PTDVQEEVLA KLLMPLSGNA RYPLEYELLI
1101: TIASIHPWLI NTTKCASTYF TPAEVASVDK YKRNFAAGCK AKFVIDLLHK SSFRGERVLV FCHNVAPIAF LVTLIEIVFG WRLGQEVLVL QGDQELHVRS
1201: DVMDKFNSDR RGKRKVLIAS TTACAEGISL TGASRLVMLD SEWNHSKTRQ AIARAFRPGQ ERMVFVYLLV ASGTWEEDKY NSNRRKAWIA KMVFFGRHFD
1301: DPLQNRVTEI DDEVLKELAD EDETNTFHMI VKQD
0101: PQATTATPSL QSVSDSFSTC ISCASGQKLR IYPLLAAFEA FHNGSWHGAN SIMIRDGGLL VKFVSSGYAV AVQHDIDGSY LRVRSRKATC SDCSHVLKPG
0201: ADVCVWQAVY RGETKDSVLL CCRDARLIKI KRNHQSDRCL CLFAVIFYKD QCPGSKEKVI SGTIADVVTI DDICILQNLQ PEELQDGSVR WNSAVDCFHH
0301: NRSKLLSARF SLEVAYLIVL SSLRRMEFNI KMVDGNIIYQ IIKGDQARDS IDSMSIPPGF GKNMDIISFK PRGEALRPIT RTVPVTQVEE GNLTEDGCIA
0401: VKGESDSAQD VEILYAHVDI RRSKRMKTQP DRFTSYDARN FNRTYNKKEA DGPSTKYEDS ESGLSCDSSE QRESSDEEAL ENPRSMAAEH KYPVKRNQCS
0501: LPVKEKQISM EIKKNTTDQG CSDSYIPHTP AKNTERPRFR LKPFASSRSL DGNSEPAFCQ KRGRKRKKHM CQIEYKRMID QCIGNIQCEV ERDSDFKFGD
0601: QILDGCVRAY QEVDFTWPSS ADSQEEKDEL DELWKEMDYA LATVAILEQK QMTDSEVVHE SNTDLGKGGE HCHHDCMLDE QLGLTCRLCN VVCIEAKDIF
0701: PPMFTGKDHE RPERNHFGQD GHVLDLSFFE ICAPEFSKIK ESGNVWASIT DLEPKLLAHQ RKAFEFIWKN LAGSLQLEEM DGSTSRGGCV VAHTPGAGKT
0801: LLLISFLVSY LKVHPRSRPL VLTPKAAIHT WRTEFQKWGI LLPLHVLHHS NRTSKLMGGL SSKLQAVLKS FHQPSWKTMR IMHCLDKLCK WHEEPSILLM
0901: TYSSFLSLTK EDSKLRHQAF ITKVLMNNPG LLILDEGHNP RSNKSKLRKL LMKVKTEFRI LLSGTVFQNN FEEYFNTLSL ARPRFVNDVM TTLVTESEKR
1001: TRSRTGKHQE ALARHVFVER VGHKIESSSK HDRMDGISLL NELTQGFIDS FEGTKLNILP GIRVYTLFMK PTDVQEEVLA KLLMPLSGNA RYPLEYELLI
1101: TIASIHPWLI NTTKCASTYF TPAEVASVDK YKRNFAAGCK AKFVIDLLHK SSFRGERVLV FCHNVAPIAF LVTLIEIVFG WRLGQEVLVL QGDQELHVRS
1201: DVMDKFNSDR RGKRKVLIAS TTACAEGISL TGASRLVMLD SEWNHSKTRQ AIARAFRPGQ ERMVFVYLLV ASGTWEEDKY NSNRRKAWIA KMVFFGRHFD
1301: DPLQNRVTEI DDEVLKELAD EDETNTFHMI VKQD
0001: MKRKHYFEFN HPFNPCPFEV FCWGTWKAVE YLRIENGTMT MRLLENGQVL DDIKPFQRLR IRSRKATLID CTSFLRPGID VCVLYQRDEE TPEPVWVDAR
0101: VLSIERKPHE SECLCTFHVS VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN LGKFLPDLTW LLVTSVLKNI
0201: VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
0301: PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN
0401: SLCGGVSGNL MDEIDKYRSK AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR TLSAGAYNKL IDSYMSRIDS
0501: TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG ETSENEILWR EMELCLASSY ILDDHEVRVD NEAFHKATCD CEHDYELNEE IGMCCRLCGH
0601: VGTEIKHVSA PFARHKKWTT ETKQINEDDI NTTIVNQDGV ESHTFTIPVA SSDMPSAEES DNVWSLIPQL KRKLHLHQKK AFEFLWKNLA GSVVPAMMDP
0701: SSDKIGGCVV SHTPGAGKTF LIIAFLASYL KIFPGKRPLV LAPKTTLYTW YKEFIKWEIP VPVHLLHGRR TYCMSKEKTI QFEGIPKPSQ DVMHVLDCLD
0801: KIQKWHAQPS VLVMGYTSFL TLMREDSKFA HRKYMAKVLR ESPGLLVLDE GHNPRSTKSR LRKALMKVDT DLRILLSGTL FQNNFCEYFN TLCLARPKFV
0901: HEVLVELDKK FQTNQAEQKA PHLLENRARK FFLDIIAKKI DTKVGDERLQ GLNMLRNMTS GFIDNYEGSG SGSGDVLPGL QIYTLLMNST DVQHKSLTKL
1001: QNIMSTYHGY PLELELLITL AAIHPWLVKT TTCCAKFFNP QELLEIEKLK HDAKKGSKVM FVLNLVFRVV KREKILIFCH NIAPIRLFLE LFENVFRWKR
1101: GRELLTLTGD LELFERGRVI DKFEEPGGQS RVLLASITAC AEGISLTAAS RVIMLDSEWN PSKTKQAIAR AFRPGQQKVV YVYQLLSRGT LEEDKYRRTT
1201: WKEWVSSMIF SEEFVEDPSQ WQAEKIEDDV LREIVEEDKV KSFHMIMKNE KASTGG
0101: VLSIERKPHE SECLCTFHVS VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN LGKFLPDLTW LLVTSVLKNI
0201: VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
0301: PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN
0401: SLCGGVSGNL MDEIDKYRSK AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR TLSAGAYNKL IDSYMSRIDS
0501: TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG ETSENEILWR EMELCLASSY ILDDHEVRVD NEAFHKATCD CEHDYELNEE IGMCCRLCGH
0601: VGTEIKHVSA PFARHKKWTT ETKQINEDDI NTTIVNQDGV ESHTFTIPVA SSDMPSAEES DNVWSLIPQL KRKLHLHQKK AFEFLWKNLA GSVVPAMMDP
0701: SSDKIGGCVV SHTPGAGKTF LIIAFLASYL KIFPGKRPLV LAPKTTLYTW YKEFIKWEIP VPVHLLHGRR TYCMSKEKTI QFEGIPKPSQ DVMHVLDCLD
0801: KIQKWHAQPS VLVMGYTSFL TLMREDSKFA HRKYMAKVLR ESPGLLVLDE GHNPRSTKSR LRKALMKVDT DLRILLSGTL FQNNFCEYFN TLCLARPKFV
0901: HEVLVELDKK FQTNQAEQKA PHLLENRARK FFLDIIAKKI DTKVGDERLQ GLNMLRNMTS GFIDNYEGSG SGSGDVLPGL QIYTLLMNST DVQHKSLTKL
1001: QNIMSTYHGY PLELELLITL AAIHPWLVKT TTCCAKFFNP QELLEIEKLK HDAKKGSKVM FVLNLVFRVV KREKILIFCH NIAPIRLFLE LFENVFRWKR
1101: GRELLTLTGD LELFERGRVI DKFEEPGGQS RVLLASITAC AEGISLTAAS RVIMLDSEWN PSKTKQAIAR AFRPGQQKVV YVYQLLSRGT LEEDKYRRTT
1201: WKEWVSSMIF SEEFVEDPSQ WQAEKIEDDV LREIVEEDKV KSFHMIMKNE KASTGG
Arabidopsis Description
CHR38Chromatin remodeling 38 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.