Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G087600.1 | Wheat | nucleus | 92.01 | 92.6 |
| TraesCS2B01G105400.1 | Wheat | nucleus | 91.3 | 92.03 |
| TraesCS2A01G089500.1 | Wheat | plastid | 90.59 | 90.8 |
| KXG37026 | Sorghum | nucleus | 62.97 | 64.72 |
| Zm00001d022576_P001 | Maize | golgi, nucleus, plasma membrane | 61.87 | 58.62 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 38.29 | 44.81 |
| VIT_13s0067g01950.t01 | Wine grape | nucleus | 34.26 | 34.12 |
| PGSC0003DMT400061540 | Potato | nucleus | 34.34 | 33.75 |
| Solyc06g050510.2.1 | Tomato | nucleus | 34.34 | 33.72 |
| AT3G42670.4 | Thale cress | nucleus | 33.39 | 33.55 |
| AT5G20420.1 | Thale cress | cytosol | 33.07 | 33.15 |
| KRG97679 | Soybean | nucleus | 32.2 | 32.96 |
| Bra021058.1-P | Field mustard | nucleus | 32.91 | 32.73 |
| KRG88505 | Soybean | endoplasmic reticulum, nucleus | 31.17 | 32.7 |
| HORVU6Hr1G061730.1 | Barley | cytosol, nucleus | 9.1 | 32.58 |
| CDY56857 | Canola | cytosol | 32.44 | 32.41 |
| CDX92463 | Canola | nucleus | 32.36 | 32.33 |
| KRH73247 | Soybean | nucleus | 33.47 | 32.29 |
| Bra002302.1-P | Field mustard | cytosol | 31.33 | 31.78 |
| HORVU2Hr1G024970.1 | Barley | nucleus | 7.44 | 28.75 |
| HORVU5Hr1G085320.1 | Barley | plastid | 17.41 | 22.56 |
| HORVU2Hr1G034330.2 | Barley | mitochondrion, nucleus, plastid | 17.17 | 22.26 |
| HORVU4Hr1G074230.3 | Barley | nucleus, plastid | 16.77 | 20.66 |
| HORVU6Hr1G061720.1 | Barley | cytosol | 5.62 | 20.0 |
| HORVU3Hr1G054100.2 | Barley | nucleus | 18.91 | 18.79 |
| HORVU6Hr1G021370.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 3.32 | 17.5 |
| HORVU1Hr1G071540.2 | Barley | nucleus | 3.72 | 17.22 |
| HORVU6Hr1G021360.1 | Barley | cytosol, mitochondrion, nucleus | 3.01 | 16.89 |
| HORVU7Hr1G119270.3 | Barley | nucleus | 3.72 | 16.79 |
| HORVU1Hr1G062970.3 | Barley | mitochondrion | 19.46 | 16.6 |
| HORVU1Hr1G064000.1 | Barley | cytosol, nucleus | 4.11 | 16.25 |
| HORVU2Hr1G037590.4 | Barley | plastid | 9.81 | 14.14 |
| Os04t0692750-01 | Rice | cytosol | 10.13 | 12.97 |
| HORVU6Hr1G078680.2 | Barley | nucleus | 9.65 | 12.49 |
| HORVU3Hr1G014660.2 | Barley | nucleus | 11.63 | 12.05 |
| HORVU2Hr1G127340.1 | Barley | cytosol | 9.57 | 10.93 |
| HORVU1Hr1G038370.1 | Barley | nucleus | 12.82 | 10.89 |
| HORVU3Hr1G014620.1 | Barley | nucleus | 0.63 | 7.41 |
| HORVU1Hr1G094870.2 | Barley | mitochondrion | 11.31 | 6.91 |
| HORVU3Hr1G014630.1 | Barley | cytosol, nucleus, plastid | 0.32 | 1.32 |
| Os04t0692700-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:12.5.1.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:HORVU2Hr1G014660 | EnsemblPlants:HORVU2Hr1G014660.2 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M0XQU5 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF792 | SMART:SM00487 | SMART:SM00490 |
| InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000294E872 | SEG:seg | : |
Description
No Description!
Coordinates
chrchr2H:-:31922208..31928816
Molecular Weight (calculated)
144386.0 Da
IEP (calculated)
8.203
GRAVY (calculated)
-0.469
Length
1264 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSHHEMLSYM AEDTLKGGPK GRRSHPISET PFEAFYDGSW HGVNCIRIRD GGLFVKFTYS SSTVEHNVDG DHLRLRSRRA TYFDCSHVLK PGVDICVQSS
0101: HLLQGSPTGE MKSSMLLCHD ARLITIKRNH IEDQCLCLFV IMLYKNQYPD NTENGDVISD RREHVVTLNN ILLLQKLQPK EIHEGSVQWS YAEDCLSHNR
0201: SKLLSARFSQ EIAHLIVLSI LNGMEFSIKL VKRNIIYRII TGGRAHCNLG STSTPPGFGN SMEIVSFQLR NEALCPIIRN IPVTHANKHN LTEDMRFTMK
0301: TELDGQLEDR RFTVKTELDG LLDVFSYEEV DLRRSKRQKT QAERFTTYDM PNFGRDRWKR RDASSSKHCN SARASRRDSP VEVESTYAEV PVNITRKQTS
0401: ATAFVVKENP NSAEGKHKST ARITPVKEKP SSVEVKEEST VEERSSDPHV PRTPAKSREK NLHLPLSLRR KSFTSSRSLN GNSEPAFGRK RKERMCEREY
0501: KKMVNQCIGN IQTEMDRDFE FYLGVPMMSY DQGFHGEVNF TWPASADSDS QEEKDGLEEF WKEMDHSLTT IALEKNQDSH SEAVHEATAD LGKSEENPCD
0601: HDCILDEELG LVCRLCNVVC VEIKHIFPQM ANGNGYNKER PGCRNFDHDD LVLDPSLLAI LGPEFSELRG SGNLWSLIPD LEPKLLPHQR NAFEFIWKNL
0701: AGSLQLEEMD NPTASTGGCV VAHTPGSGKT LLLISFLVSY LKVHPRSRPL VLTPKSAIHT WMREFEKWGI SVPLHLLHQA DRRGKPMWPI DPRLQAILSN
0801: FRRPSWKNIC LVDRLDKLCK WHERPSVLLM TYSSFLRLAK EDSRMPQRAF MAQVLINNPG LLILDEGHNP RSNKSKLRRV LMKVKTEFRI LMSGTVFQNN
0901: FEEYFNTLSL ARPRFVDDVM TALVPERKKE TSGRRAKHRE AVARRIFVDR VGQMIESSNN WDRAGGISLL NKLTCGFIDS FEGSKLRSLP GIHVYTLFMK
1001: PTEIQGDILS KISMATSCGG RYLLEVQLLI TIASIHPWLI KTTKCSSTYF TPEEVHEVDR YKRDFAVGCK AKFVIDLLHK SSYRGERVLI FCHNVSPISF
1101: LVELIENVFG WRLGEEVLVL QGDQELPVRS DVIDKFNTDS QGKRKVLIAS TTACAEGISL TGASRLVMLD SEWNHSKTRQ AIARAFRPGQ ERTVYVYLLV
1201: AYGTWEEDKY NSNRRKAWMA KMVFHGRYFD DPLQNAVTAI DDDLLKELAD EDKSKTFHMI VKQD
0101: HLLQGSPTGE MKSSMLLCHD ARLITIKRNH IEDQCLCLFV IMLYKNQYPD NTENGDVISD RREHVVTLNN ILLLQKLQPK EIHEGSVQWS YAEDCLSHNR
0201: SKLLSARFSQ EIAHLIVLSI LNGMEFSIKL VKRNIIYRII TGGRAHCNLG STSTPPGFGN SMEIVSFQLR NEALCPIIRN IPVTHANKHN LTEDMRFTMK
0301: TELDGQLEDR RFTVKTELDG LLDVFSYEEV DLRRSKRQKT QAERFTTYDM PNFGRDRWKR RDASSSKHCN SARASRRDSP VEVESTYAEV PVNITRKQTS
0401: ATAFVVKENP NSAEGKHKST ARITPVKEKP SSVEVKEEST VEERSSDPHV PRTPAKSREK NLHLPLSLRR KSFTSSRSLN GNSEPAFGRK RKERMCEREY
0501: KKMVNQCIGN IQTEMDRDFE FYLGVPMMSY DQGFHGEVNF TWPASADSDS QEEKDGLEEF WKEMDHSLTT IALEKNQDSH SEAVHEATAD LGKSEENPCD
0601: HDCILDEELG LVCRLCNVVC VEIKHIFPQM ANGNGYNKER PGCRNFDHDD LVLDPSLLAI LGPEFSELRG SGNLWSLIPD LEPKLLPHQR NAFEFIWKNL
0701: AGSLQLEEMD NPTASTGGCV VAHTPGSGKT LLLISFLVSY LKVHPRSRPL VLTPKSAIHT WMREFEKWGI SVPLHLLHQA DRRGKPMWPI DPRLQAILSN
0801: FRRPSWKNIC LVDRLDKLCK WHERPSVLLM TYSSFLRLAK EDSRMPQRAF MAQVLINNPG LLILDEGHNP RSNKSKLRRV LMKVKTEFRI LMSGTVFQNN
0901: FEEYFNTLSL ARPRFVDDVM TALVPERKKE TSGRRAKHRE AVARRIFVDR VGQMIESSNN WDRAGGISLL NKLTCGFIDS FEGSKLRSLP GIHVYTLFMK
1001: PTEIQGDILS KISMATSCGG RYLLEVQLLI TIASIHPWLI KTTKCSSTYF TPEEVHEVDR YKRDFAVGCK AKFVIDLLHK SSYRGERVLI FCHNVSPISF
1101: LVELIENVFG WRLGEEVLVL QGDQELPVRS DVIDKFNTDS QGKRKVLIAS TTACAEGISL TGASRLVMLD SEWNHSKTRQ AIARAFRPGQ ERTVYVYLLV
1201: AYGTWEEDKY NSNRRKAWMA KMVFHGRYFD DPLQNAVTAI DDDLLKELAD EDKSKTFHMI VKQD
0001: MKRKHYFEFN HPFNPCPFEV FCWGTWKAVE YLRIENGTMT MRLLENGQVL DDIKPFQRLR IRSRKATLID CTSFLRPGID VCVLYQRDEE TPEPVWVDAR
0101: VLSIERKPHE SECLCTFHVS VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN LGKFLPDLTW LLVTSVLKNI
0201: VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
0301: PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN
0401: SLCGGVSGNL MDEIDKYRSK AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR TLSAGAYNKL IDSYMSRIDS
0501: TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG ETSENEILWR EMELCLASSY ILDDHEVRVD NEAFHKATCD CEHDYELNEE IGMCCRLCGH
0601: VGTEIKHVSA PFARHKKWTT ETKQINEDDI NTTIVNQDGV ESHTFTIPVA SSDMPSAEES DNVWSLIPQL KRKLHLHQKK AFEFLWKNLA GSVVPAMMDP
0701: SSDKIGGCVV SHTPGAGKTF LIIAFLASYL KIFPGKRPLV LAPKTTLYTW YKEFIKWEIP VPVHLLHGRR TYCMSKEKTI QFEGIPKPSQ DVMHVLDCLD
0801: KIQKWHAQPS VLVMGYTSFL TLMREDSKFA HRKYMAKVLR ESPGLLVLDE GHNPRSTKSR LRKALMKVDT DLRILLSGTL FQNNFCEYFN TLCLARPKFV
0901: HEVLVELDKK FQTNQAEQKA PHLLENRARK FFLDIIAKKI DTKVGDERLQ GLNMLRNMTS GFIDNYEGSG SGSGDVLPGL QIYTLLMNST DVQHKSLTKL
1001: QNIMSTYHGY PLELELLITL AAIHPWLVKT TTCCAKFFNP QELLEIEKLK HDAKKGSKVM FVLNLVFRVV KREKILIFCH NIAPIRLFLE LFENVFRWKR
1101: GRELLTLTGD LELFERGRVI DKFEEPGGQS RVLLASITAC AEGISLTAAS RVIMLDSEWN PSKTKQAIAR AFRPGQQKVV YVYQLLSRGT LEEDKYRRTT
1201: WKEWVSSMIF SEEFVEDPSQ WQAEKIEDDV LREIVEEDKV KSFHMIMKNE KASTGG
0101: VLSIERKPHE SECLCTFHVS VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN LGKFLPDLTW LLVTSVLKNI
0201: VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
0301: PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN
0401: SLCGGVSGNL MDEIDKYRSK AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR TLSAGAYNKL IDSYMSRIDS
0501: TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG ETSENEILWR EMELCLASSY ILDDHEVRVD NEAFHKATCD CEHDYELNEE IGMCCRLCGH
0601: VGTEIKHVSA PFARHKKWTT ETKQINEDDI NTTIVNQDGV ESHTFTIPVA SSDMPSAEES DNVWSLIPQL KRKLHLHQKK AFEFLWKNLA GSVVPAMMDP
0701: SSDKIGGCVV SHTPGAGKTF LIIAFLASYL KIFPGKRPLV LAPKTTLYTW YKEFIKWEIP VPVHLLHGRR TYCMSKEKTI QFEGIPKPSQ DVMHVLDCLD
0801: KIQKWHAQPS VLVMGYTSFL TLMREDSKFA HRKYMAKVLR ESPGLLVLDE GHNPRSTKSR LRKALMKVDT DLRILLSGTL FQNNFCEYFN TLCLARPKFV
0901: HEVLVELDKK FQTNQAEQKA PHLLENRARK FFLDIIAKKI DTKVGDERLQ GLNMLRNMTS GFIDNYEGSG SGSGDVLPGL QIYTLLMNST DVQHKSLTKL
1001: QNIMSTYHGY PLELELLITL AAIHPWLVKT TTCCAKFFNP QELLEIEKLK HDAKKGSKVM FVLNLVFRVV KREKILIFCH NIAPIRLFLE LFENVFRWKR
1101: GRELLTLTGD LELFERGRVI DKFEEPGGQS RVLLASITAC AEGISLTAAS RVIMLDSEWN PSKTKQAIAR AFRPGQQKVV YVYQLLSRGT LEEDKYRRTT
1201: WKEWVSSMIF SEEFVEDPSQ WQAEKIEDDV LREIVEEDKV KSFHMIMKNE KASTGG
Arabidopsis Description
CHR38Chromatin remodeling 38 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.