Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021058.1-P | Field mustard | nucleus | 81.88 | 81.04 |
| AT5G20420.1 | Thale cress | cytosol | 74.24 | 74.07 |
| KRG88505 | Soybean | endoplasmic reticulum, nucleus | 49.84 | 52.03 |
| KRH73247 | Soybean | nucleus | 52.78 | 50.69 |
| KRG97679 | Soybean | nucleus | 48.97 | 49.88 |
| VIT_13s0067g01950.t01 | Wine grape | nucleus | 50.24 | 49.8 |
| PGSC0003DMT400061540 | Potato | nucleus | 48.17 | 47.12 |
| Solyc06g050510.2.1 | Tomato | nucleus | 48.17 | 47.09 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 32.59 | 37.96 |
| KXG37026 | Sorghum | nucleus | 34.18 | 34.96 |
| HORVU2Hr1G014660.2 | Barley | nucleus | 33.55 | 33.39 |
| TraesCS2B01G105400.1 | Wheat | nucleus | 33.23 | 33.33 |
| TraesCS2D01G087600.1 | Wheat | nucleus | 32.99 | 33.04 |
| TraesCS2A01G089500.1 | Wheat | plastid | 32.75 | 32.67 |
| Zm00001d022576_P001 | Maize | golgi, nucleus, plasma membrane | 33.62 | 31.71 |
| AT2G21450.2 | Thale cress | nucleus | 16.61 | 25.39 |
| AT2G16390.2 | Thale cress | nucleus | 16.45 | 23.23 |
| AT3G32330.1 | Thale cress | cytosol | 5.96 | 22.94 |
| AT3G24340.1 | Thale cress | nucleus | 19.0 | 21.11 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 19.87 | 17.73 |
| AT3G31900.1 | Thale cress | cytosol | 4.93 | 15.78 |
| AT3G32280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 5.64 | 14.98 |
| AT1G03750.1 | Thale cress | plastid | 10.25 | 14.97 |
| Os04t0692750-01 | Rice | cytosol | 10.73 | 13.68 |
| AT3G19210.1 | Thale cress | nucleus | 9.86 | 13.63 |
| AT5G63950.1 | Thale cress | cytosol | 10.25 | 11.83 |
| AT2G18760.3 | Thale cress | nucleus | 11.53 | 11.64 |
| AT1G08600.3 | Thale cress | nucleus | 13.28 | 11.29 |
| AT3G54280.2 | Thale cress | mitochondrion | 11.84 | 7.0 |
| Os04t0692700-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:12.5.1.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EntrezGene:823287 | UniProt:A0A1I9LTS2 | ProteinID:ANM65980.1 |
| ArrayExpress:AT3G42670 | EnsemblPlantsGene:AT3G42670 | RefSeq:AT3G42670 | TAIR:AT3G42670 | RefSeq:AT3G42670-TAIR-G | EnsemblPlants:AT3G42670.4 |
| Unigene:At.43953 | Symbol:CHR38 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 |
| RefSeq:NP_001327911.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF792 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | UniParc:UPI00084929C5 | SEG:seg | : | : | : |
Description
CHR38Chromatin remodeling 38 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS2]
Coordinates
chr3:-:14755798..14760085
Molecular Weight (calculated)
144857.0 Da
IEP (calculated)
6.894
GRAVY (calculated)
-0.457
Length
1258 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRKHYFEFN HPFNPCPFEV FCWGTWKAVE YLRIENGTMT MRLLENGQVL DDIKPFQRLR IRSRKATLID CTSFLRPGID VCVLYQRDEE TPEPVWVDAR
0101: VLSIERKPHE SECLCTFHVS VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN LGKFLPDLTW LLVTSVLKNI
0201: VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
0301: PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN
0401: SLCGGVSGNL MDEIDKYRSK AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR TLSAGAYNKL IDSYMSRIDS
0501: TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG ETSENEILWR EMELCLASSY ILDDHEFQVR VDNEAFHKAT CDCEHDYELN EEIGMCCRLC
0601: GHVGTEIKHV SAPFARHKKW TTETKQINED DINTTIVNQD GVESHTFTIP VASSDMPSAE ESDNVWSLIP QLKRKLHLHQ KKAFEFLWKN LAGSVVPAMM
0701: DPSSDKIGGC VVSHTPGAGK TFLIIAFLAS YLKIFPGKRP LVLAPKTTLY TWYKEFIKWE IPVPVHLLHG RRTYCMSKEK TIQFEGIPKP SQDVMHVLDC
0801: LDKIQKWHAQ PSVLVMGYTS FLTLMREDSK FAHRKYMAKV LRESPGLLVL DEGHNPRSTK SRLRKALMKV DTDLRILLSG TLFQNNFCEY FNTLCLARPK
0901: FVHEVLVELD KKFQTNQAEQ KAPHLLENRA RKFFLDIIAK KIDTKVGDER LQGLNMLRNM TSGFIDNYEG SGSGSGDVLP GLQIYTLLMN STDVQHKSLT
1001: KLQNIMSTYH GYPLELELLI TLAAIHPWLV KTTTCCAKFF NPQELLEIEK LKHDAKKGSK VMFVLNLVFR VVKREKILIF CHNIAPIRLF LELFENVFRW
1101: KRGRELLTLT GDLELFERGR VIDKFEEPGG QSRVLLASIT ACAEGISLTA ASRVIMLDSE WNPSKTKQAI ARAFRPGQQK VVYVYQLLSR GTLEEDKYRR
1201: TTWKEWVSSM IFSEEFVEDP SQWQAEKIED DVLREIVEED KVKSFHMIMK NEKASTGG
0101: VLSIERKPHE SECLCTFHVS VYIDQGCIGL EKHRMNKVPV LVGLNEIAIL QKFCKEQSLD RYYRWRYSED CSSLVKTRLN LGKFLPDLTW LLVTSVLKNI
0201: VFQIRTVHEK MVYQIVTDED CEGSSSSLSA MNITVEDGVV MSKVVLFNPA EDTCQDSDVK EEIEEEVMEL RRSKRRSGRP ERYGDSEIQP DSKDGWVRMM
0301: PYRYNIWNVS SDDDDEEEDC EDDKDTDDDL YLPLSHLLRK KGSKKGFSKD KQREIVLVDK TERKKRKKTE GFSRSCELSV IPFTPVFEPI PLEQFGLNAN
0401: SLCGGVSGNL MDEIDKYRSK AAKYGKKKKK KIEMEEMESD LGWNGPIGNV VHKRNGPHSR IRSVSRETGV SEEPQIYKKR TLSAGAYNKL IDSYMSRIDS
0501: TIAAKDKATN VVEQWQGLKN PASFSIEAEE RLSEEEEDDG ETSENEILWR EMELCLASSY ILDDHEFQVR VDNEAFHKAT CDCEHDYELN EEIGMCCRLC
0601: GHVGTEIKHV SAPFARHKKW TTETKQINED DINTTIVNQD GVESHTFTIP VASSDMPSAE ESDNVWSLIP QLKRKLHLHQ KKAFEFLWKN LAGSVVPAMM
0701: DPSSDKIGGC VVSHTPGAGK TFLIIAFLAS YLKIFPGKRP LVLAPKTTLY TWYKEFIKWE IPVPVHLLHG RRTYCMSKEK TIQFEGIPKP SQDVMHVLDC
0801: LDKIQKWHAQ PSVLVMGYTS FLTLMREDSK FAHRKYMAKV LRESPGLLVL DEGHNPRSTK SRLRKALMKV DTDLRILLSG TLFQNNFCEY FNTLCLARPK
0901: FVHEVLVELD KKFQTNQAEQ KAPHLLENRA RKFFLDIIAK KIDTKVGDER LQGLNMLRNM TSGFIDNYEG SGSGSGDVLP GLQIYTLLMN STDVQHKSLT
1001: KLQNIMSTYH GYPLELELLI TLAAIHPWLV KTTTCCAKFF NPQELLEIEK LKHDAKKGSK VMFVLNLVFR VVKREKILIF CHNIAPIRLF LELFENVFRW
1101: KRGRELLTLT GDLELFERGR VIDKFEEPGG QSRVLLASIT ACAEGISLTA ASRVIMLDSE WNPSKTKQAI ARAFRPGQQK VVYVYQLLSR GTLEEDKYRR
1201: TTWKEWVSSM IFSEEFVEDP SQWQAEKIED DVLREIVEED KVKSFHMIMK NEKASTGG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.