Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G31900.1 | Thale cress | cytosol | 64.56 | 77.86 |
| AT3G32330.1 | Thale cress | cytosol | 37.34 | 54.13 |
| AT2G16390.2 | Thale cress | nucleus | 25.74 | 13.69 |
| AT2G21450.2 | Thale cress | nucleus | 20.68 | 11.91 |
| AT3G24340.1 | Thale cress | nucleus | 13.71 | 5.74 |
| AT3G42670.4 | Thale cress | nucleus | 14.98 | 5.64 |
| AT5G20420.1 | Thale cress | cytosol | 14.77 | 5.55 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 15.19 | 5.11 |
| AT5G63950.1 | Thale cress | cytosol | 9.07 | 3.94 |
| AT1G03750.1 | Thale cress | plastid | 7.17 | 3.94 |
| AT3G19210.1 | Thale cress | nucleus | 7.17 | 3.74 |
| AT1G08600.3 | Thale cress | nucleus | 10.97 | 3.52 |
| AT2G18760.3 | Thale cress | nucleus | 8.02 | 3.05 |
| AT3G54280.2 | Thale cress | mitochondrion | 8.44 | 1.88 |
Protein Annotations
| Gene3D:3.40.50.10810 | MapMan:35.1 | EntrezGene:823000 | ProteinID:AEE77695.1 | ArrayExpress:AT3G32280 | EnsemblPlantsGene:AT3G32280 |
| RefSeq:AT3G32280 | TAIR:AT3G32280 | RefSeq:AT3G32280-TAIR-G | EnsemblPlants:AT3G32280.1 | TAIR:AT3G32280.1 | Unigene:At.53637 |
| UniProt:F4JA84 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 |
| InterPro:IPR038718 | RefSeq:NP_189770.1 | InterPro:P-loop_NTPase | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF807 | InterPro:SNF2-like_sf |
| SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI0000163667 | SEG:seg | : | : |
Description
ATP-dependent helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4JA84]
Coordinates
chr3:+:13233832..13240154
Molecular Weight (calculated)
53582.1 Da
IEP (calculated)
7.599
GRAVY (calculated)
-0.025
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTFMNTKDE LEHVAFLVLW LRYFVFPSGF HYLYVTMFPI AIHLSSGTKT ALVVLAHLSI ELSLDPHHIE ILNFLCNNLV VENPNGCILA QARGPEKTYL
101: MINFIYDLYQ NDDKRKKVVA LENQEAGGSC VDGNVAHWFS KTKFNGLVDV PIVYLALEEN VVKNDLTLRS SLKHVIIGGS SGGSNSGKGL ANDLYLDVNE
201: LVEVQVRSDK EINMMKDKGK TIFDFNEAIW PKDEPISNTF EKSGATLTNC EHSWIWKQGL GHTCWICGII DKDHPLPPGF GSNICKDIKM RVPKDGFSGT
301: GIFPHPLHRM IMKPHHFEIL NFLYKNLVVE NSNGCIIAQT PLSEKTFLMI SFIYGYLEKH PNSKSLFVLP KWVLNGLKRW IKTRSIIFLG AKQFSNIVSD
401: NSGAEASDSC RDILLNILSV VVFDRGTDPR NEMMCFLKVV SRIKTPHKVL LTGSLYKNNI KEVFNIFDVA FPNF
101: MINFIYDLYQ NDDKRKKVVA LENQEAGGSC VDGNVAHWFS KTKFNGLVDV PIVYLALEEN VVKNDLTLRS SLKHVIIGGS SGGSNSGKGL ANDLYLDVNE
201: LVEVQVRSDK EINMMKDKGK TIFDFNEAIW PKDEPISNTF EKSGATLTNC EHSWIWKQGL GHTCWICGII DKDHPLPPGF GSNICKDIKM RVPKDGFSGT
301: GIFPHPLHRM IMKPHHFEIL NFLYKNLVVE NSNGCIIAQT PLSEKTFLMI SFIYGYLEKH PNSKSLFVLP KWVLNGLKRW IKTRSIIFLG AKQFSNIVSD
401: NSGAEASDSC RDILLNILSV VVFDRGTDPR NEMMCFLKVV SRIKTPHKVL LTGSLYKNNI KEVFNIFDVA FPNF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.