Factsheet for AT1G05490.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077650.1.1	Tomato	cytosol	2.77	75.0
CDY47279	Canola	nucleus	65.04	68.59
CDY10115	Canola	nucleus	65.53	67.01
Bra015430.1-P	Field mustard	nucleus	66.38	59.13
VIT_02s0012g00110.t01	Wine grape	cytosol	24.11	52.71
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	6.24	50.57
PGSC0003DMT400033315	Potato	nucleus	5.04	48.97
HORVU6Hr1G061730.1	Barley	cytosol, nucleus	11.77	47.03
Solyc03g061640.1.1	Tomato	cytosol	5.53	46.99
Os05t0392400-01	Rice	cytosol, nucleus	14.96	46.89
KRH39939	Soybean	nucleus	20.14	46.03
Solyc08g077580.1.1	Tomato	cytosol	5.53	45.09
Solyc08g061350.1.1	Tomato	mitochondrion	2.27	45.07
Solyc04g054440.1.1	Tomato	nucleus	20.35	43.82
Solyc08g062060.1.1	Tomato	nucleus	3.26	43.4
Solyc01g068320.1.1	Tomato	cytosol	20.5	43.26
PGSC0003DMT400017302	Potato	nucleus	19.08	43.18
Solyc08g061370.1.1	Tomato	cytosol	5.32	43.1
Solyc08g077610.1.1	Tomato	nucleus	20.21	42.6
PGSC0003DMT400088837	Potato	cytosol	5.67	42.33
Solyc08g062000.1.1	Tomato	cytosol	11.7	42.2
Solyc02g033050.1.1	Tomato	nucleus	18.65	41.81
PGSC0003DMT400096321	Potato	nucleus	3.69	41.6
Solyc01g068300.1.1	Tomato	cytosol	11.49	41.54
Solyc01g060460.1.1	Tomato	nucleus	22.41	41.52
Solyc08g077690.2.1	Tomato	nucleus	21.7	41.3
Solyc08g061410.1.1	Tomato	cytosol	12.77	41.0
AT3G24340.1	Thale cress	nucleus	31.84	39.66
PGSC0003DMT400085993	Potato	cytosol	4.61	38.69
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	6.6	38.59
PGSC0003DMT400090992	Potato	mitochondrion	6.45	37.14
Solyc08g061390.1.1	Tomato	cytosol	6.45	36.69
Solyc08g062070.1.1	Tomato	cytosol	3.4	36.09
Solyc08g061340.1.1	Tomato	cytosol	5.67	35.87
Os02t0650800-00	Rice	cytosol	23.33	35.11
GSMUA_Achr7P06840_001	Banana	nucleus	23.33	34.89
KRH23851	Soybean	mitochondrion, nucleus	28.72	34.73
PGSC0003DMT400004629	Potato	nucleus	21.84	34.53
KRH46527	Soybean	nucleus	27.73	34.06
Solyc08g061990.1.1	Tomato	mitochondrion	9.29	34.03
PGSC0003DMT400004673	Potato	nucleus	21.99	33.84
KRH46528	Soybean	cytosol, extracellular, nucleus	29.15	32.99
Solyc08g077600.1.1	Tomato	cytosol	9.15	32.82
PGSC0003DMT400004672	Potato	nucleus	22.98	32.56
Solyc08g077670.1.1	Tomato	cytosol	10.43	32.45
TraesCS3B01G251000.1	Wheat	nucleus	24.04	31.95
TraesCS3A01G220700.1	Wheat	nucleus	23.9	31.91
TraesCS3A01G238800.1	Wheat	nucleus	23.62	31.5
HORVU6Hr1G061720.1	Barley	cytosol	7.66	30.42
PGSC0003DMT400037430	Potato	nucleus	13.97	29.32
TraesCS2D01G053900.1	Wheat	nucleus	22.2	28.82
TraesCS6A01G241100.1	Wheat	nucleus	23.26	28.8
PGSC0003DMT400017313	Potato	nucleus	24.33	28.46
PGSC0003DMT400085944	Potato	cytosol	4.68	28.09
HORVU3Hr1G054100.2	Barley	nucleus	24.96	27.67
PGSC0003DMT400038789	Potato	nucleus	21.7	27.67
TraesCS3D01G231800.1	Wheat	nucleus	24.68	27.4
KXG31163	Sorghum	nucleus	24.61	27.15
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	27.02	25.59
TraesCS1D01G245400.1	Wheat	nucleus	26.88	25.52
OQU77943	Sorghum	mitochondrion	26.38	25.51
Zm00001d038113_P001	Maize	mitochondrion, nucleus	25.96	25.51
Zm00001d051324_P001	Maize	nucleus	24.18	25.5
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	26.95	25.45
HORVU1Hr1G062970.3	Barley	mitochondrion	26.67	25.37
AT2G21450.2	Thale cress	nucleus	14.33	24.54
AT2G16390.2	Thale cress	nucleus	15.11	23.91
AT3G32330.1	Thale cress	cytosol	5.46	23.55
AT3G42670.4	Thale cress	nucleus	17.73	19.87
AT5G20420.1	Thale cress	cytosol	17.66	19.75
AT3G31900.1	Thale cress	cytosol	4.4	15.78
AT3G32280.1	Thale cress	endoplasmic reticulum, plasma membrane	5.11	15.19
AT1G03750.1	Thale cress	plastid	8.94	14.62
AT3G19210.1	Thale cress	nucleus	9.29	14.4
AT5G63950.1	Thale cress	cytosol	9.5	12.29
AT1G08600.3	Thale cress	nucleus	11.56	11.02
AT2G18760.3	Thale cress	nucleus	9.65	10.91
AT3G54280.2	Thale cress	mitochondrion	11.28	7.47
HORVU3Hr1G014620.1	Barley	nucleus	0.21	2.78
Os02t0762600-01	Rice	cytosol	0.0	0.0

Protein Annotations

MapMan:16.10.1.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	EntrezGene:837051	ProteinID:AAF79734.1	ProteinID:AEE27845.1
EMBL:AK226351	ArrayExpress:AT1G05490	EnsemblPlantsGene:AT1G05490	RefSeq:AT1G05490	TAIR:AT1G05490	RefSeq:AT1G05490-TAIR-G
EnsemblPlants:AT1G05490.1	TAIR:AT1G05490.1	Unigene:At.42396	UniProt:F4I8S3	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	RefSeq:NP_172040.2	InterPro:P-loop_NTPase
PFAM:PF00176	PFAM:PF00271	PO:PO:0000037	PO:PO:0000230	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007611	PO:PO:0007616	PO:PO:0009009	PO:PO:0009010
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0025022	PO:PO:0025281	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF858	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI000150577B	Symbol:chr31	SEG:seg	:	:	:

Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]

Coordinates

chr1:-:1618504..1623489

Molecular Weight (calculated)

158732.0 Da

IEP (calculated)

5.805

GRAVY (calculated)

-0.675

Length

1410 amino acids

Sequence
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.