Factsheet for Solyc01g068320.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g068300.1.1	Tomato	cytosol	54.94	94.1
PGSC0003DMT400017302	Potato	nucleus	87.28	93.58
Solyc08g077650.1.1	Tomato	cytosol	7.19	92.31
Solyc04g054440.1.1	Tomato	nucleus	83.23	84.89
Solyc02g033050.1.1	Tomato	nucleus	78.74	83.62
Solyc08g077610.1.1	Tomato	nucleus	82.78	82.66
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	20.51	78.74
Solyc08g061410.1.1	Tomato	cytosol	50.3	76.54
Solyc08g077580.1.1	Tomato	cytosol	19.76	76.3
Solyc08g077690.2.1	Tomato	nucleus	84.28	75.98
Solyc08g061340.1.1	Tomato	cytosol	25.15	75.34
Solyc03g061640.1.1	Tomato	cytosol	18.56	74.7
Solyc08g062080.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	13.02	73.11
Solyc08g062000.1.1	Tomato	cytosol	42.37	72.38
Solyc01g060460.1.1	Tomato	nucleus	81.29	71.35
Solyc08g061420.1.1	Tomato	cytosol	9.43	70.79
Solyc08g061370.1.1	Tomato	cytosol	17.81	68.39
Solyc08g061350.1.1	Tomato	mitochondrion	7.04	66.2
Solyc08g061990.1.1	Tomato	mitochondrion	37.13	64.42
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	22.16	61.41
Solyc08g061390.1.1	Tomato	cytosol	22.01	59.27
Solyc08g077670.1.1	Tomato	cytosol	36.38	53.64
Solyc08g077600.1.1	Tomato	cytosol	30.84	52.42
PGSC0003DMT400017313	Potato	nucleus	92.66	51.37
Solyc08g062060.1.1	Tomato	nucleus	7.93	50.0
Solyc08g062070.1.1	Tomato	cytosol	9.58	48.12
VIT_02s0012g00110.t01	Wine grape	cytosol	44.76	46.36
Os05t0392400-01	Rice	cytosol, nucleus	27.84	41.33
KRH39939	Soybean	nucleus	31.44	34.04
Zm00001d047708_P001	Maize	cytosol	7.78	30.23
Os02t0650800-00	Rice	cytosol	41.62	29.67
GSMUA_Achr7P06840_001	Banana	nucleus	40.72	28.84
TraesCS3A01G220700.1	Wheat	nucleus	40.87	25.85
TraesCS3B01G251000.1	Wheat	nucleus	40.72	25.64
TraesCS3A01G238800.1	Wheat	nucleus	40.27	25.45
AT3G24340.1	Thale cress	nucleus	42.81	25.27
KRH23851	Soybean	mitochondrion, nucleus	42.81	24.53
KRH46527	Soybean	nucleus	41.77	24.3
TraesCS6A01G241100.1	Wheat	nucleus	38.32	22.48
TraesCS2D01G053900.1	Wheat	nucleus	35.93	22.1
KRH46528	Soybean	cytosol, extracellular, nucleus	40.87	21.91
KXG31163	Sorghum	nucleus	41.47	21.67
TraesCS3D01G231800.1	Wheat	nucleus	41.02	21.57
AT1G05490.1	Thale cress	mitochondrion, nucleus	43.26	20.5
Solyc01g109970.2.1	Tomato	extracellular	26.8	19.74
TraesCS1D01G245400.1	Wheat	nucleus	43.56	19.6
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	43.71	19.56
OQU77943	Sorghum	mitochondrion	42.66	19.55
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	43.56	19.54
Solyc06g050510.2.1	Tomato	nucleus	30.84	16.01
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	8.68	15.72
Solyc07g053870.2.1	Tomato	plastid	17.37	13.08
Solyc04g056410.2.1	Tomato	nucleus	10.18	11.58
Solyc04g050150.2.1	Tomato	nucleus	20.96	11.5
Solyc01g068280.2.1	Tomato	nucleus	19.31	10.62
Solyc09g066480.2.1	Tomato	nucleus	19.01	10.47
Solyc08g074500.2.1	Tomato	cytosol, nucleus, plastid	17.52	9.23
Solyc04g050160.2.1	Tomato	nucleus	0.9	1.9
Os02t0762600-01	Rice	cytosol	0.15	0.65
Solyc08g074520.1.1	Tomato	nucleus	0.0	0.0
Os02t0161300-01	Rice	extracellular	0.0	0.0

Protein Annotations

MapMan:16.10.1.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718
UniProt:K4AX78	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF858	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g068320.1	EnsemblPlants:Solyc01g068320.1.1	UniParc:UPI0002763565	:	:

Description

No Description!

Coordinates

chr1:-:77532712..77535794

Molecular Weight (calculated)

75522.0 Da

IEP (calculated)

8.416

GRAVY (calculated)

-0.308

Length

668 amino acids

Sequence
(BLAST)

001: MQMCILESDI GFTNPSVSAT QSGNLNDCQM GNHQLVLDEQ IGLICKVCSY VHLEIKYIFP SFAQRTRGRY ERKHLGQSPL FLDVAGFRFS DSSAVEDSLI
101: NEEGTVWDLV PQRAKSTMYP HQRGGFEFMW KNVAGDTNLE RLRQPLSDSK GGCIISHPPG TGKTRLTIVF LQSYLKLFPK SRPVIVAPSS LLLNWEAEFQ
201: KWEVDNPFHN LNSKDFSLQE DEATVSVFRC LSHAGKRNPH LIRMVKLGSW VKGNSVLGIS YDLFRILTAD DGDGYAKPIR EILLKYPGLL VLEEGHTARN
301: EQSLVWKALK KVETDKRIVL SGTPFQNNIK ELYNTLCVVS PKFAADLEQK WASLSSSIDK NARALEELRD IISPLVHKCS ENVKKVSLPG IRDTVIHLKP
401: TDLQKELLRR IPENPSSFYE QNLVSLISVH PSLVANRKEF SDLESQLKER GCRLNPDTGV KMKFVVELIR LCGGRKERVI IFSQLLDPLN LIKEQLNSLF
501: DWTLGREILY MDGKLDVKQR QISINSVNDP KSDVKVLLAS IKACSEGISL IGASRVVLLD VLWNPSVEQQ AISRAYRNGQ TKFVHVYCPV TSKWEVDKIE
601: QQTRKKYHSD VLLSKNNEAK MDSVSEDNIL ESMVEHEGLR HIFEKLSHAP RVVPPTTCLN SCPPKPSS

Best Arabidopsis Sequence Match ( AT1G05490.1 )
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Arabidopsis Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.