Factsheet for GSMUA_Achr7P06840_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077650.1.1	Tomato	cytosol	3.61	65.38
Os05t0392400-01	Rice	cytosol, nucleus	29.27	61.33
PGSC0003DMT400033315	Potato	nucleus	7.42	48.28
Solyc03g061640.1.1	Tomato	cytosol	8.38	47.59
VIT_02s0012g00110.t01	Wine grape	cytosol	31.18	45.58
Solyc08g077580.1.1	Tomato	cytosol	8.17	44.51
PGSC0003DMT400096321	Potato	nucleus	5.83	44.0
Solyc01g068300.1.1	Tomato	cytosol	18.03	43.59
CDX77430	Canola	nucleus	30.65	42.94
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	7.74	41.95
Solyc08g062060.1.1	Tomato	nucleus	4.67	41.51
Solyc04g054440.1.1	Tomato	nucleus	28.74	41.37
Solyc08g061410.1.1	Tomato	cytosol	19.09	41.0
Solyc08g077610.1.1	Tomato	nucleus	28.95	40.81
Solyc01g068320.1.1	Tomato	cytosol	28.84	40.72
Solyc02g033050.1.1	Tomato	nucleus	26.94	40.38
PGSC0003DMT400017302	Potato	nucleus	26.51	40.13
Solyc08g077690.2.1	Tomato	nucleus	30.33	38.6
Solyc08g062000.1.1	Tomato	cytosol	15.91	38.36
Solyc01g060460.1.1	Tomato	nucleus	29.48	36.53
PGSC0003DMT400088837	Potato	cytosol	7.21	35.98
CDY59589	Canola	nucleus	6.68	35.8
CDY29038	Canola	nucleus	6.57	35.23
Solyc08g062070.1.1	Tomato	cytosol	4.88	34.59
Zm00001d038113_P001	Maize	mitochondrion, nucleus	52.28	34.36
KRH39939	Soybean	nucleus	22.16	33.87
HORVU1Hr1G062970.3	Barley	mitochondrion	53.13	33.81
TraesCS1D01G245400.1	Wheat	nucleus	53.23	33.8
OQU77943	Sorghum	mitochondrion	52.17	33.74
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	53.23	33.71
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	53.23	33.62
Solyc08g061370.1.1	Tomato	cytosol	6.15	33.33
PGSC0003DMT400085944	Potato	cytosol	8.17	32.77
CDX93009	Canola	nucleus	33.3	32.37
Solyc08g061390.1.1	Tomato	cytosol	8.48	32.26
PGSC0003DMT400090992	Potato	mitochondrion	8.38	32.24
CDX94823	Canola	nucleus	33.3	32.24
PGSC0003DMT400085993	Potato	cytosol	5.62	31.55
Solyc08g061340.1.1	Tomato	cytosol	7.42	31.39
PGSC0003DMT400004629	Potato	nucleus	29.48	31.17
CDY66441	Canola	nucleus	33.93	30.98
Bra015035.1-P	Field mustard	nucleus	33.83	30.61
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	7.74	30.29
Solyc08g061990.1.1	Tomato	mitochondrion	12.3	30.13
Bra001944.1-P	Field mustard	nucleus	33.51	29.64
Solyc08g077600.1.1	Tomato	cytosol	12.3	29.52
Solyc08g077670.1.1	Tomato	cytosol	14.1	29.36
PGSC0003DMT400004673	Potato	nucleus	28.21	29.04
PGSC0003DMT400004672	Potato	nucleus	29.37	27.84
KRH46527	Soybean	nucleus	33.09	27.18
KRH23851	Soybean	mitochondrion, nucleus	33.4	27.02
AT3G24340.1	Thale cress	nucleus	31.92	26.59
KRH46528	Soybean	cytosol, extracellular, nucleus	33.51	25.36
PGSC0003DMT400037430	Potato	nucleus	17.71	24.85
CDY47279	Canola	nucleus	34.36	24.23
PGSC0003DMT400017313	Potato	nucleus	30.65	23.98
CDY10115	Canola	nucleus	34.46	23.57
AT1G05490.1	Thale cress	mitochondrion, nucleus	34.89	23.33
PGSC0003DMT400038789	Potato	nucleus	26.3	22.42
Bra015430.1-P	Field mustard	nucleus	34.57	20.59
GSMUA_Achr8P01860_001	Banana	nucleus	22.69	19.81
Solyc08g061350.1.1	Tomato	mitochondrion	1.38	18.31
GSMUA_Achr6P04530_001	Banana	nucleus	14.95	15.9
GSMUA_Achr7P00330_001	Banana	plastid	12.09	13.12
GSMUA_Achr5P24600_001	Banana	nucleus	12.62	12.74
GSMUA_AchrUn_...	Banana	cytosol	13.89	11.83
GSMUA_Achr4P25080_001	Banana	nucleus	14.0	11.7
GSMUA_Achr7P23270_001	Banana	nucleus	12.83	8.5
GSMUA_Achr4P25070_001	Banana	golgi	1.91	7.11
GSMUA_Achr4P27500_001	Banana	mitochondrion	14.53	6.68

Protein Annotations

MapMan:16.10.1.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr7G06840_001	EnsemblPlants:GSMUA_Achr7P06840_001	EnsemblPlants:GSMUA_Achr7T06840_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	UniProt:M0TFC4	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF937	SMART:SM00487
SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	UniParc:UPI000296E1F8	SEG:seg

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G06840_001]

Coordinates

chr7:+:5022751..5026837

Molecular Weight (calculated)

106620.0 Da

IEP (calculated)

5.151

GRAVY (calculated)

-0.478

Length

943 amino acids

Sequence
(BLAST)

001: MALDDVEKDW GSSVKNDELS GQRDVKESDE DGAKAKEELT TDSCVAKRTR SSVGKQQRVS YGQYFEEDES DDDDADGEAS QEDVPYDHTN ELAAESMRST
101: FEGRTDGCKE KGRCSASLLK KRRFSVTNIP LSVSNTETST GGPASRGGFG ISVRTQSHFD SKLDEKENKP GIATETFCLD VDESDELFGL NKEDKKGGER
201: EGIKLEGFRV GKFQKRERDR PLKHSGIKIC FDAFFSHTEK LPVDSFPPKN EPYCEEPDFF SFEVPKGVEK SDSEKAMDEL WADFEFAMGL ENIGTYNADK
301: CQGEEFNTQE PEYDPLTSCC EGKHCFILDE QTGIKCKFCS FVQLEIRYIF PSLETNAWEK SEWKCFSGES GQLHFNYLCE TLTKLNGQAS HSHLCGTVWD
401: LIPGVYTTMY EHQQEAFEFM WRNLAGGIHL DELKSGSGSD VLGGCVISHA PGTGKTRLSI VFIQTYMKVF PECRPVIIAP SGMLLTWEEE ARKWDVSIPI
501: HNLNSLEYNG KEDKEALSLA EKEPQRSNLI RLLVLDEGHI PRNERSLIWK VLGKVKTEKR IILSGTPFQN NFVELYNILC LVRPKFAEKI STKTLKSCRR
601: QEIFLDKEQA ILAGENGGKG IWATLTSDVT NDNVEEVRSI LKPFVHVHNG SILKNLPGLR ECLIVLDPLP QQKSIIEKIK CIGSHGNFER EYKVCLASIH
701: PSLVTHLNMS EEEESLVDTN LLEKLKLSPV EGAKTRFVIE VVRLCDPLNE KVLIFSQYIQ PLVMIKEQLI NEFGWNEGKE VLQMDGKILT KNRQPSIDIF
801: NDTKGKAKVL LASTKACCEG ISLTGASRVI LLDVVWNPAV GRQAISRAYR IGQKKFVYAY NLITFGTGER EKYDKQSKKD LLSKLLFSPE IDFNNLRNSI
901: SQSEEGHFPK IISEDKILEQ IVERLKIMFV DIYYPPKEYC ICA

Best Arabidopsis Sequence Match ( AT1G05490.1 )
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Arabidopsis Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.