Factsheet for Solyc08g061990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g061350.1.1	Tomato	mitochondrion	15.06	81.69
Solyc08g061340.1.1	Tomato	cytosol	38.7	66.82
Solyc01g068300.1.1	Tomato	cytosol	54.55	53.85
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	23.38	51.72
Solyc08g062000.1.1	Tomato	cytosol	51.95	51.15
Solyc08g061410.1.1	Tomato	cytosol	52.99	46.47
Solyc08g077580.1.1	Tomato	cytosol	19.48	43.35
Solyc02g033050.1.1	Tomato	nucleus	64.68	39.59
Solyc08g077610.1.1	Tomato	nucleus	68.05	39.16
Solyc04g054440.1.1	Tomato	nucleus	63.64	37.4
Solyc01g068320.1.1	Tomato	cytosol	64.42	37.13
Solyc08g062070.1.1	Tomato	cytosol	12.21	35.34
Solyc08g077690.2.1	Tomato	nucleus	63.12	32.79
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	20.52	32.78
Solyc08g077600.1.1	Tomato	cytosol	32.47	31.81
Solyc01g060460.1.1	Tomato	nucleus	60.52	30.62
Solyc08g077650.1.1	Tomato	cytosol	3.9	28.85
Os05t0392400-01	Rice	cytosol, nucleus	32.47	27.78
Solyc03g061640.1.1	Tomato	cytosol	11.95	27.71
PGSC0003DMT400004673	Potato	nucleus	61.04	25.66
VIT_02s0012g00110.t01	Wine grape	cytosol	38.96	23.26
Solyc08g077670.1.1	Tomato	cytosol	21.82	18.54
KRH39939	Soybean	nucleus	27.27	17.02
Solyc08g061390.1.1	Tomato	cytosol	10.65	16.53
Os02t0650800-00	Rice	cytosol	33.51	13.77
TraesCS3A01G220700.1	Wheat	nucleus	34.29	12.5
TraesCS3A01G238800.1	Wheat	nucleus	34.03	12.39
TraesCS3B01G251000.1	Wheat	nucleus	34.03	12.35
GSMUA_Achr7P06840_001	Banana	nucleus	30.13	12.3
Solyc08g061370.1.1	Tomato	cytosol	5.45	12.07
AT3G24340.1	Thale cress	nucleus	34.03	11.57
KRH23851	Soybean	mitochondrion, nucleus	34.81	11.49
TraesCS2D01G053900.1	Wheat	nucleus	32.21	11.42
TraesCS6A01G241100.1	Wheat	nucleus	33.25	11.24
KRH46527	Soybean	nucleus	33.51	11.24
Solyc01g109970.2.1	Tomato	extracellular	25.19	10.69
TraesCS3D01G231800.1	Wheat	nucleus	34.29	10.39
KRH46528	Soybean	cytosol, extracellular, nucleus	33.51	10.35
KXG31163	Sorghum	nucleus	34.03	10.25
AT1G05490.1	Thale cress	mitochondrion, nucleus	34.03	9.29
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	35.58	9.18
TraesCS1D01G245400.1	Wheat	nucleus	35.32	9.16
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	35.32	9.13
OQU77943	Sorghum	mitochondrion	34.29	9.05
Solyc06g050510.2.1	Tomato	nucleus	26.23	7.85
Solyc04g056410.2.1	Tomato	nucleus	11.95	7.84
Solyc04g050150.2.1	Tomato	nucleus	20.52	6.49
Solyc01g068280.2.1	Tomato	nucleus	19.74	6.26
Solyc07g053870.2.1	Tomato	plastid	14.29	6.2
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	5.45	5.69
Solyc09g066480.2.1	Tomato	nucleus	17.4	5.52
Solyc08g074500.2.1	Tomato	cytosol, nucleus, plastid	15.58	4.73
Solyc04g050160.2.1	Tomato	nucleus	0.26	0.32
Zm00001d047708_P001	Maize	cytosol	0.0	0.0
Os02t0161300-01	Rice	extracellular	0.0	0.0
Os02t0762600-01	Rice	cytosol	0.0	0.0
Solyc08g074520.1.1	Tomato	nucleus	0.0	0.0
Solyc08g062080.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	0.0	0.0
Solyc08g062060.1.1	Tomato	nucleus	0.0	0.0
Solyc08g061420.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc08g061990.1.1	EnsemblPlantsGene:Solyc08g061990.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:IPR038718	InterPro:P-loop_NTPase	InterPro:SNF2-like_sf	InterPro:SNF2_N
PANTHER:PTHR10799	PANTHER:PTHR10799:SF858	PFAM:PF00176	SUPFAM:SSF52540	UniParc:UPI000276AEC6	UniProt:K4CKY8
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:50298213..50299484

Molecular Weight (calculated)

44726.1 Da

IEP (calculated)

10.483

GRAVY (calculated)

-0.183

Length

385 amino acids

Sequence
(BLAST)

001: MVKLKSWAKS KSVLGIRYDL FRILTGEDGE GYNKELSEIL LKFPGLLVCK EGHTARNENN LVWKELKKVE TEKRVLISQT PFQNNTKELY NTLSVVSPKI
101: VADLEQKSAS LSSLIDKNAR ALEDLRDIHS PFVHKYSENV KMVSLQGIRD TIIDLKPTEL LNRVPENSTP FYEQNLMSLI SVHPSFVANK KEFSELESQI
201: KERRCRLYPN IGVKKKFVIQ LIRIWGGWKE RVIVFSQLLD PLNLIKKQLN SLFSWSLARI SLIGASRVVL LDVLWNPSLE QQVISRVYRS GQTKFVHFYC
301: HRNGRLTRSN NKQERYIIPM YFRPGMKKTL HVLCQRITYL NAWLSMRASV IFLKSNLMLF MWCLRHALIL VANLQKGVVK QSDLF

Best Arabidopsis Sequence Match ( AT1G05490.1 )
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Arabidopsis Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.