Factsheet for Solyc08g062060.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g061420.1.1	Tomato	cytosol	57.55	68.54
Solyc08g062080.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	50.0	44.54
Solyc08g061370.1.1	Tomato	cytosol	55.66	33.91
Solyc03g061640.1.1	Tomato	cytosol	38.68	24.7
Solyc08g061390.1.1	Tomato	cytosol	45.28	19.35
Solyc08g077600.1.1	Tomato	cytosol	57.55	15.52
Zm00001d047708_P001	Maize	cytosol	24.53	15.12
Solyc08g077670.1.1	Tomato	cytosol	43.4	10.15
Solyc04g054440.1.1	Tomato	nucleus	51.89	8.4
Solyc01g068320.1.1	Tomato	cytosol	50.0	7.93
Solyc08g077610.1.1	Tomato	nucleus	49.06	7.77
Solyc01g060460.1.1	Tomato	nucleus	52.83	7.36
Solyc08g077690.2.1	Tomato	nucleus	47.17	6.75
Solyc02g033050.1.1	Tomato	nucleus	36.79	6.2
VIT_02s0012g00110.t01	Wine grape	cytosol	36.79	6.05
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	16.98	4.88
Solyc08g062000.1.1	Tomato	cytosol	17.92	4.86
GSMUA_Achr7P06840_001	Banana	nucleus	41.51	4.67
KRH39939	Soybean	nucleus	25.47	4.38
Os02t0650800-00	Rice	cytosol	37.74	4.27
TraesCS3A01G220700.1	Wheat	nucleus	42.45	4.26
TraesCS3B01G251000.1	Wheat	nucleus	41.51	4.15
TraesCS3A01G238800.1	Wheat	nucleus	40.57	4.07
AT3G24340.1	Thale cress	nucleus	41.51	3.89
KRH23851	Soybean	mitochondrion, nucleus	41.51	3.77
KRH46527	Soybean	nucleus	40.57	3.75
TraesCS3D01G231800.1	Wheat	nucleus	42.45	3.54
TraesCS6A01G241100.1	Wheat	nucleus	35.85	3.34
KRH46528	Soybean	cytosol, extracellular, nucleus	38.68	3.29
KXG31163	Sorghum	nucleus	39.62	3.29
AT1G05490.1	Thale cress	mitochondrion, nucleus	43.4	3.26
Solyc01g109970.2.1	Tomato	extracellular	26.42	3.09
TraesCS1D01G245400.1	Wheat	nucleus	41.51	2.96
TraesCS1A01G245700.1	Wheat	mitochondrion, nucleus	41.51	2.96
TraesCS1B01G256700.1	Wheat	mitochondrion, nucleus	41.51	2.95
OQU77943	Sorghum	mitochondrion	38.68	2.81
Solyc06g050510.2.1	Tomato	nucleus	33.96	2.8
TraesCS2D01G053900.1	Wheat	nucleus	24.53	2.39
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	4.72	2.07
Solyc07g053870.2.1	Tomato	plastid	15.09	1.8
Solyc01g068280.2.1	Tomato	nucleus	18.87	1.65
Solyc09g066480.2.1	Tomato	nucleus	17.92	1.57
Solyc04g050150.2.1	Tomato	nucleus	17.92	1.56
Solyc08g074500.2.1	Tomato	cytosol, nucleus, plastid	13.21	1.1
Solyc08g062070.1.1	Tomato	cytosol	0.94	0.75
Solyc04g050160.2.1	Tomato	nucleus	0.94	0.32
Solyc08g074520.1.1	Tomato	nucleus	1.89	0.3
Solyc08g061410.1.1	Tomato	cytosol	0.94	0.23
PGSC0003DMT400085993	Potato	cytosol	0.0	0.0
Solyc04g056410.2.1	Tomato	nucleus	0.0	0.0
Solyc08g061340.1.1	Tomato	cytosol	0.0	0.0
Solyc08g061350.1.1	Tomato	mitochondrion	0.0	0.0
Solyc01g068300.1.1	Tomato	cytosol	0.0	0.0
Solyc08g061990.1.1	Tomato	mitochondrion	0.0	0.0
Os05t0392400-01	Rice	cytosol, nucleus	0.0	0.0
Solyc08g077580.1.1	Tomato	cytosol	0.0	0.0
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	0.0	0.0
Os02t0161300-01	Rice	extracellular	0.0	0.0
Solyc08g077650.1.1	Tomato	cytosol	0.0	0.0
Os02t0762600-01	Rice	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc08g062060.1.1	EnsemblPlantsGene:Solyc08g062060.1	Gene3D:3.40.50.10810	InterPro:IPR038718	InterPro:P-loop_NTPase	InterPro:SNF2-like_sf
PANTHER:PTHR10799	PANTHER:PTHR10799:SF858	SEG:seg	SUPFAM:SSF52540	UniParc:UPI000276AECD	UniProt:K4CKZ5
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:50363985..50364908

Molecular Weight (calculated)

12056.2 Da

IEP (calculated)

4.948

GRAVY (calculated)

-0.662

Length

106 amino acids

Sequence
(BLAST)

001: MVELSESANH NKSKTKNEEE SNDEESCEEV SDYEECKLWD LVPPNVKVAM YPHQCGGFEF MWKHIAGDIT FERLREPLSK SRGGCIISHP PGTGKTRLNI
101: VFLQSL

Best Arabidopsis Sequence Match ( AT1G05490.1 )
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Arabidopsis Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.