Factsheet for Solyc07g053870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082782	Potato	plastid	96.05	95.95
VIT_12s0028g03440.t01	Wine grape	plastid	71.48	72.54
KRH25617	Soybean	nucleus	67.98	69.31
AT1G03750.1	Thale cress	plastid	63.13	64.97
GSMUA_Achr7P00330_001	Banana	plastid	62.8	64.1
TraesCS2A01G185300.1	Wheat	plastid	59.3	60.67
TraesCS2D01G202400.1	Wheat	plastid	59.19	60.55
TraesCS2B01G222000.1	Wheat	plastid	59.08	60.44
Os05t0247900-01	Rice	plastid	58.29	60.4
Zm00001d013828_P002	Maize	plastid	59.75	60.3
HORVU2Hr1G037590.4	Barley	plastid	59.19	59.86
EER91354	Sorghum	plastid	59.75	59.68
Solyc08g077650.1.1	Tomato	cytosol	2.25	38.46
CDY37413	Canola	mitochondrion, nucleus	62.91	34.83
CDY32510	Canola	mitochondrion, nucleus	62.57	34.56
Bra032544.1-P	Field mustard	nucleus	62.68	33.84
Solyc03g061640.1.1	Tomato	cytosol	4.28	22.89
Solyc08g061420.1.1	Tomato	cytosol	2.25	22.47
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	3.95	20.11
Solyc04g056410.2.1	Tomato	nucleus	13.3	20.1
Solyc01g068300.1.1	Tomato	cytosol	8.68	19.74
Solyc08g062080.1.1	Tomato	cytosol, mitochondrion, nucleus, plastid	2.59	19.33
Solyc08g077580.1.1	Tomato	cytosol	3.72	19.08
Solyc08g061370.1.1	Tomato	cytosol	3.72	18.97
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	7.78	18.7
Solyc08g062000.1.1	Tomato	cytosol	8.12	18.41
Solyc08g062070.1.1	Tomato	cytosol	2.71	18.05
Solyc09g066480.2.1	Tomato	nucleus	24.46	17.89
Solyc01g068320.1.1	Tomato	cytosol	13.08	17.37
Solyc08g077610.1.1	Tomato	nucleus	13.08	17.34
Solyc04g054440.1.1	Tomato	nucleus	12.74	17.25
Solyc02g033050.1.1	Tomato	nucleus	12.06	17.01
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	4.4	16.18
Solyc08g061410.1.1	Tomato	cytosol	8.0	16.17
Solyc08g077690.2.1	Tomato	nucleus	13.19	15.79
Solyc01g060460.1.1	Tomato	nucleus	13.42	15.64
Solyc01g068280.2.1	Tomato	nucleus	20.74	15.14
Solyc08g062060.1.1	Tomato	nucleus	1.8	15.09
Solyc08g061340.1.1	Tomato	cytosol	3.72	14.8
Solyc04g050150.2.1	Tomato	nucleus	19.62	14.3
Solyc08g061990.1.1	Tomato	mitochondrion	6.2	14.29
Solyc08g074500.2.1	Tomato	cytosol, nucleus, plastid	19.84	13.88
Solyc08g077600.1.1	Tomato	cytosol	6.09	13.74
Solyc01g109970.2.1	Tomato	extracellular	13.64	13.34
Solyc08g061350.1.1	Tomato	mitochondrion	1.01	12.68
Solyc08g061390.1.1	Tomato	cytosol	3.38	12.1
Solyc08g077670.1.1	Tomato	cytosol	5.52	10.82
Solyc06g050510.2.1	Tomato	nucleus	12.97	8.94
Solyc04g050160.2.1	Tomato	nucleus	0.68	1.9
Solyc08g074520.1.1	Tomato	nucleus	1.24	1.68

Protein Annotations

MapMan:12.4.1.4.3	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	UniProt:K4CFT2	InterPro:P-loop_NTPase	PFAM:PF00176
PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799	PANTHER:PTHR10799:SF804	SMART:SM00487
SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc07g053870.2	EnsemblPlants:Solyc07g053870.2.1
UniParc:UPI000276C1FD	SEG:seg	:	:	:	:

Description

Switch 2 [Source:Projected from Arabidopsis thaliana (AT1G03750) UniProtKB/Swiss-Prot;Acc:F4I2H2]

Coordinates

chr7:-:62277427..62285594

Molecular Weight (calculated)

100811.0 Da

IEP (calculated)

8.274

GRAVY (calculated)

-0.515

Length

887 amino acids

Sequence
(BLAST)

001: MSLNTFKETL KPCTNQSISQ SSSTSYNFET KSVNPRKPPK SSLSQQLLRL EDHTSLIQNK PQTPKKQNHF ELKRKYEKTE EEEVEEEEEK GIGVGKPKLD
101: PLLLDQAGPY EPLVLSSLEG KPPVQVPASI NCRLLEHQRE GVKFLYSLYQ NNHGGVLGDD MGLGKTIQSI AFLAAVYGKD GDLPESSVSK ERQRTMGPVL
201: IVCPSSLINN WENEFSKWAT FSVCIYHGPN CDLMVDKLEA RGVEILITSF DTYRIHGRIL SDIEWEIVII DEAHRLKNEK SKLYEACLAI KTPKRYGLTG
301: TIMQNRLMEL FNLFDWVIPG CLGTRDHFRE FYEEPLKHGQ RSSAPDRFVR VAGERKQHLV SVLRKYLLRR TKEETIGHLM LGKEDNVVFC AMSELQKRVY
401: QRMLLLPDVQ CLINKDVPCS CGSPLKQVEC CRRTASDGVI WPYLHRDNPD GCDHCPFCLV LPCLVKLQQI SNHLELIKPN PRDDPDKQRR DAEFAAAVFG
501: EDVDLVGGNT QNKSFLGLSN VEHCGKMRAL EKLMSSWVSQ SDKILLFSYS VRMLDILEKF IIRKGYGFSR LDGSTPTGLR QSLVDDFNSS PSKQVFLLST
601: KAGGLGLNLV SANRVVIFDP NWNPAHDLQA QDRSFRFGQK RHVIVFRLLA AGSLEELVYT RQVYKQQLSN IAVSGNMEKR YFEGVQDSKE FQGELFGICN
701: LFRDLSDKLF TSNIIELHEK NRKKDDGTHS KEDLNVRGMY FVPEKDITTA SFEGAESSKR KEEECTAVAP ALEDLGIVYA HRYEDIVNLG PAKIKEKKEQ
801: TMHLDYPPRQ PKASTAGKKK LDTITGKENT GTVNPITIHK KNQYSILARS MGMEEVQFSK WLLSATPAER EKVLKDYRKR KEKIPNG

Best Arabidopsis Sequence Match ( AT1G03750.1 )
(BLAST)

001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK

Arabidopsis Description

SWI2Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.