Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g053870.2.1 | Tomato | plastid | 95.95 | 96.05 |
| VIT_12s0028g03440.t01 | Wine grape | plastid | 72.41 | 73.57 |
| KRH25617 | Soybean | nucleus | 68.69 | 70.11 |
| AT1G03750.1 | Thale cress | plastid | 63.85 | 65.78 |
| GSMUA_Achr7P00330_001 | Banana | plastid | 63.4 | 64.79 |
| Os05t0247900-01 | Rice | plastid | 59.12 | 61.33 |
| Zm00001d013828_P002 | Maize | plastid | 60.59 | 61.21 |
| TraesCS2A01G185300.1 | Wheat | plastid | 59.57 | 61.02 |
| TraesCS2D01G202400.1 | Wheat | plastid | 59.46 | 60.9 |
| TraesCS2B01G222000.1 | Wheat | plastid | 59.35 | 60.78 |
| EER91354 | Sorghum | plastid | 60.59 | 60.59 |
| HORVU2Hr1G037590.4 | Barley | plastid | 59.57 | 60.32 |
| CDY37413 | Canola | mitochondrion, nucleus | 63.63 | 35.27 |
| CDY32510 | Canola | mitochondrion, nucleus | 63.4 | 35.06 |
| Bra032544.1-P | Field mustard | nucleus | 63.51 | 34.33 |
| PGSC0003DMT400033315 | Potato | nucleus | 4.05 | 24.83 |
| PGSC0003DMT400096321 | Potato | nucleus | 3.38 | 24.0 |
| PGSC0003DMT400076122 | Potato | cytosol, nucleus, plastid | 19.37 | 23.69 |
| PGSC0003DMT400085993 | Potato | cytosol | 3.83 | 20.24 |
| PGSC0003DMT400026641 | Potato | nucleus | 24.1 | 17.64 |
| PGSC0003DMT400017302 | Potato | nucleus | 11.6 | 16.53 |
| PGSC0003DMT400088837 | Potato | cytosol | 3.38 | 15.87 |
| PGSC0003DMT400085944 | Potato | cytosol | 4.17 | 15.74 |
| PGSC0003DMT400090992 | Potato | mitochondrion | 3.94 | 14.29 |
| PGSC0003DMT400079488 | Potato | nucleus | 13.29 | 12.76 |
| PGSC0003DMT400004629 | Potato | nucleus | 12.61 | 12.56 |
| PGSC0003DMT400004673 | Potato | nucleus | 11.94 | 11.57 |
| PGSC0003DMT400004672 | Potato | nucleus | 12.84 | 11.46 |
| PGSC0003DMT400017313 | Potato | nucleus | 13.51 | 9.96 |
| PGSC0003DMT400038789 | Potato | nucleus | 11.71 | 9.4 |
| PGSC0003DMT400061540 | Potato | nucleus | 13.06 | 9.02 |
| PGSC0003DMT400037430 | Potato | nucleus | 6.42 | 8.48 |
Protein Annotations
| EntrezGene:102603050 | MapMan:12.4.1.4.3 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0016020 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M1D688 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | EnsemblPlantsGene:PGSC0003DMG400032815 | PGSC:PGSC0003DMG400032815 | EnsemblPlants:PGSC0003DMT400082782 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF804 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | UniParc:UPI0002948083 | RefSeq:XP_006367475.1 | SEG:seg | : | : |
Description
Chromatin remodeling complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400032815]
Coordinates
chr7:+:49342921..49352214
Molecular Weight (calculated)
101215.0 Da
IEP (calculated)
8.450
GRAVY (calculated)
-0.505
Length
888 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLNTFKETL KPCTNQSFSQ SSSTSYNFDT KSVNPRKPPK SSLSQQLLRL EDHTSLLQNQ PQTPKKQNHF DLKRKYEKSE EEEVVEEEEE KGIGFGRPKL
101: DSLLLDQAGP YEPLVLSSLG EKSLVQVPAS INCRLLEHQR EGVKFLYSLY RNNHGGVLGD DMGLGKTIQS IAFLAAVYGK DGDLPESSVS KERRRTMGPV
201: LIVCPSSLIN NWENEFSKWA TFSVCIYHGP NRDLMIDKLE ARGVEILITS FDTYRIHGRI LSAIEWEIVI VDEAHRLKNE KSKLYEACLA IKTPKRYGLT
301: GTIMQNRLME LFNLFDWVIP GCLGTRDHFR EFYEEPLKHG QRSSAPDRFV RVADERKQHL VSVLRKYLLR RTKEETIGHL MLGKEDNVVF CAMSELQKRV
401: YQRMLLLPDV QCLINKDVPC SCGSPLKQVE CCRRTASDGV IWPYLHRDNP DGCDHCPFCL VLPCLVKLQQ ISNHLELIKP NPRDDPDKQR RDAEFAAAVF
501: GEDVDLVGGS TQNKSFLGLS NVEHCGKMRA LEKLMSSWVS QSDKILLFSY SVRMLDILEK FIIRKGYGFS RLDGSTPTGL RQSLVDDFNS SPSKQVFLLS
601: TKAGGLGLNL VSANRVVIFD PNWNPAHDLQ AQDRSFRFGQ KRHVIVFRLL AAGSLEELVY TRQVYKQQLS NIAVSGNMEK RYFEGVQDSK EFQGELFGIC
701: NLFRDLSDKL FTSEIIELHE KNRKKNDGTH SKEDLNVRGM YFVPEKEITT ASFVEAESSK RKEEECTAVA PALEDLGIVY AHRYEDIVNL GPAKIKEKKE
801: QTIHLDYPPR QPKISTAEKK KSDTITGKEN AGSVNPIMIR KKNQYSLLAR SMGMEEVQFS KWLLSATPAE REKVLKDYRK RKEKIPNG
101: DSLLLDQAGP YEPLVLSSLG EKSLVQVPAS INCRLLEHQR EGVKFLYSLY RNNHGGVLGD DMGLGKTIQS IAFLAAVYGK DGDLPESSVS KERRRTMGPV
201: LIVCPSSLIN NWENEFSKWA TFSVCIYHGP NRDLMIDKLE ARGVEILITS FDTYRIHGRI LSAIEWEIVI VDEAHRLKNE KSKLYEACLA IKTPKRYGLT
301: GTIMQNRLME LFNLFDWVIP GCLGTRDHFR EFYEEPLKHG QRSSAPDRFV RVADERKQHL VSVLRKYLLR RTKEETIGHL MLGKEDNVVF CAMSELQKRV
401: YQRMLLLPDV QCLINKDVPC SCGSPLKQVE CCRRTASDGV IWPYLHRDNP DGCDHCPFCL VLPCLVKLQQ ISNHLELIKP NPRDDPDKQR RDAEFAAAVF
501: GEDVDLVGGS TQNKSFLGLS NVEHCGKMRA LEKLMSSWVS QSDKILLFSY SVRMLDILEK FIIRKGYGFS RLDGSTPTGL RQSLVDDFNS SPSKQVFLLS
601: TKAGGLGLNL VSANRVVIFD PNWNPAHDLQ AQDRSFRFGQ KRHVIVFRLL AAGSLEELVY TRQVYKQQLS NIAVSGNMEK RYFEGVQDSK EFQGELFGIC
701: NLFRDLSDKL FTSEIIELHE KNRKKNDGTH SKEDLNVRGM YFVPEKEITT ASFVEAESSK RKEEECTAVA PALEDLGIVY AHRYEDIVNL GPAKIKEKKE
801: QTIHLDYPPR QPKISTAEKK KSDTITGKEN AGSVNPIMIR KKNQYSLLAR SMGMEEVQFS KWLLSATPAE REKVLKDYRK RKEKIPNG
001: MSLLHTFKET LKPCGSFPSS SSLRVSSTQE LEPSRKPPKS SLSQQLLRLD DSYFLPSKHE SKISKTQVED FDHNEDDHKR NIKFDEEEVD EDDERSIEFG
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
101: RPGLSRAEFD YSGPYEPLML SSIGEIPIIH VPASINCRLL EHQREGVKFM YNLYKNNHGG ILGDDMGLGK TIQTIAFLAA VYGKDGDAGE SCLLESDKGP
201: VLIICPSSII HNWESEFSRW ASFFKVSVYH GSNRDMILEK LKARGVEVLV TSFDTFRIQG PVLSGINWEI VIADEAHRLK NEKSKLYEAC LEIKTKKRIG
301: LTGTVMQNKI SELFNLFEWV APGSLGTREH FRDFYDEPLK LGQRATAPER FVQIADKRKQ HLGSLLRKYM LRRTKEETIG HLMMGKEDNV VFCQMSQLQR
401: RVYQRMIQLP EIQCLVNKDN PCACGSPLKQ SECCRRIVPD GTIWSYLHRD NHDGCDSCPF CLVLPCLMKL QQISNHLELI KPNPKDEPEK QKKDAEFVST
501: VFGTDIDLLG GISASKSFMD LSDVKHCGKM RALEKLMASW ISKGDKILLF SYSVRMLDIL EKFLIRKGYS FARLDGSTPT NLRQSLVDDF NASPSKQVFL
601: ISTKAGGLGL NLVSANRVVI FDPNWNPSHD LQAQDRSFRY GQKRHVVVFR LLSAGSLEEL VYTRQVYKQQ LSNIAVAGKM ETRYFEGVQD CKEFQGELFG
701: ISNLFRDLSD KLFTSDIVEL HRDSNIDENK KRSLLETGVS EDEKEEEVMC SYKPEMEKPI LKDLGIVYAH RNEDIINIGE TTTSTSQRLN GDGNSADRKK
801: KKRKGCSEEE DMSSSNREQK REKYKMLAEF KGMEILEFSR WVLSASPFDR EKLLQDFLER VK
Arabidopsis Description
SWI2Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.