Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g050510.2.1 | Tomato | nucleus | 97.28 | 97.2 |
| VIT_13s0067g01950.t01 | Wine grape | nucleus | 53.58 | 54.29 |
| KRG88505 | Soybean | endoplasmic reticulum, nucleus | 46.42 | 49.54 |
| KRH73247 | Soybean | nucleus | 49.84 | 48.93 |
| AT3G42670.4 | Thale cress | nucleus | 47.12 | 48.17 |
| KRG97679 | Soybean | nucleus | 45.57 | 47.45 |
| CDX92463 | Canola | nucleus | 46.5 | 47.27 |
| CDY56857 | Canola | cytosol | 46.42 | 47.19 |
| AT5G20420.1 | Thale cress | cytosol | 46.03 | 46.95 |
| Bra021058.1-P | Field mustard | nucleus | 46.19 | 46.73 |
| Bra002302.1-P | Field mustard | cytosol | 45.18 | 46.63 |
| GSMUA_Achr8P01860_001 | Banana | nucleus | 33.44 | 39.81 |
| PGSC0003DMT400033315 | Potato | nucleus | 4.04 | 35.86 |
| KXG37026 | Sorghum | nucleus | 33.59 | 35.12 |
| TraesCS2B01G105400.1 | Wheat | nucleus | 33.75 | 34.61 |
| TraesCS2D01G087600.1 | Wheat | nucleus | 33.67 | 34.47 |
| HORVU2Hr1G014660.2 | Barley | nucleus | 33.75 | 34.34 |
| TraesCS2A01G089500.1 | Wheat | plastid | 33.51 | 34.18 |
| Zm00001d022576_P001 | Maize | golgi, nucleus, plasma membrane | 33.28 | 32.08 |
| PGSC0003DMT400017302 | Potato | nucleus | 14.93 | 30.82 |
| PGSC0003DMT400096321 | Potato | nucleus | 2.88 | 29.6 |
| PGSC0003DMT400088837 | Potato | cytosol | 4.04 | 27.51 |
| PGSC0003DMT400085993 | Potato | cytosol | 3.5 | 26.79 |
| PGSC0003DMT400085944 | Potato | cytosol | 4.67 | 25.53 |
| PGSC0003DMT400004629 | Potato | nucleus | 17.5 | 25.22 |
| PGSC0003DMT400090992 | Potato | mitochondrion | 4.59 | 24.08 |
| PGSC0003DMT400004673 | Potato | nucleus | 16.56 | 23.25 |
| PGSC0003DMT400004672 | Potato | nucleus | 17.19 | 22.21 |
| PGSC0003DMT400079488 | Potato | nucleus | 15.55 | 21.62 |
| PGSC0003DMT400037430 | Potato | nucleus | 10.89 | 20.83 |
| PGSC0003DMT400017313 | Potato | nucleus | 17.73 | 18.92 |
| PGSC0003DMT400038789 | Potato | nucleus | 15.79 | 18.35 |
| PGSC0003DMT400076122 | Potato | cytosol, nucleus, plastid | 8.32 | 14.74 |
| Os04t0692750-01 | Rice | cytosol | 10.65 | 13.88 |
| PGSC0003DMT400082782 | Potato | plastid | 9.02 | 13.06 |
| PGSC0003DMT400026641 | Potato | nucleus | 10.73 | 11.38 |
| Os04t0692700-01 | Rice | nucleus | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:102579983 | MapMan:12.5.1.10 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | UniProt:M1C7N3 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | EnsemblPlantsGene:PGSC0003DMG400023950 |
| PGSC:PGSC0003DMG400023950 | EnsemblPlants:PGSC0003DMT400061540 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF792 |
| SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000296A48C |
| RefSeq:XP_006353420.1 | RefSeq:XP_006353421.1 | RefSeq:XP_015166817.1 | RefSeq:XP_015166818.1 | RefSeq:XP_015166819.1 | SEG:seg |
Description
SNF2 domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023950]
Coordinates
chr6:-:30378677..30384893
Molecular Weight (calculated)
146737.0 Da
IEP (calculated)
8.014
GRAVY (calculated)
-0.436
Length
1286 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRHIHYNAH PIDPHPFEAF WYGSWQAVER LRINMGTITT HVLVDGEVIE ENIPVTNLRM RSRKATLSDC ACFLRPGLEV CVLSIPYQGE DSGDEKDVKP
0101: VWIDGKIRSI ERKPHELTCT CEFHVSVYVT QGPPPILKKT LSKEIKMLPI DQIAVLQKLE PKPCEDKHYR WSSSEDCNSL QTFKLFIGKF SSDLTWLMTA
0201: SVLKEATFDV RSIHNQIVYE IVDDDLVKKE SNPNQHSHSV NFKLEDGVQT TTVFQFSRDI PDVNSTSDLS EAGPLVLYDL MGPRRSKRRF VQPERYYGCD
0301: DDMAEFDVEM TRLVGGRRKV EYEELPLALS IQADHAYRTG EIDEIARSYK RELFGGSIRP HEKSSESSSG WRNALKSDVN KLADKKSVTA DSQHQLAIVP
0401: LHPSSGTDLT VHEQVPLDVD VPEHLSAEIG EIVSRYIYFN SSSTSHDRKA SKMNFTKPEA RRWGQVKISK LKFMGLDRRG GALGSHKKYK RNSSKKDSIY
0501: DIRSFKKGSV AANVYKELIR RCMANIDATL NKEQPPIIDQ WKEFQSTKSD HRESGDHLAM NRDEEVSEID MLWKEMELAL ASCYLLDDSE DSHVQYASNV
0601: RIGAEIRGEV CRHDYRLNEE IGIICRLCGF VSTEIKDVPP PFMPSSNYSS NKEQRTEEAT DHKQDDDGLD TLSIPVSSRA PSSSGGGEGN VWELIPDLGK
0701: KLRVHQKRAF EFLWKNIAGS IVPAEMQPES KERGGCVISH TPGAGKTLLI ISFLVSYLKL FPGSRPLVLA PKTTLYTWYK EVLKWKIPVP VYQIHGGQTF
0801: KGEVLREKVK LCPGLPRNQD VMHVLDCLEK MQMWLSQPSV LLMGYTSFLT LTREDSPYAH RKYMAQVLRH CPGLLILDEG HNPRSTKSRL RKGLMKVNTR
0901: LRILLSGTLF QNNFGEYFNT LTLARPTFVD EVLKELDPKY KKKNKGASRF SLENRARKMF IDKISTVIDS DIPKKRKEGL NILKKLTGGF IDVHDGGTSD
1001: NLPGLQCYTL MMKSTTLQQE ILVKLQNQRP IYKGFPLELE LLITLGAIHP WLIRTTACSS QYFKEEELEA LQKFKFDLKL GSKVKFVMSL IPRCLLRREK
1101: VLIFCHNIAP INLFLEIFER FYGWRKGIEV LVLQGDIELF QRGRIMDLFE EPGGPSKVML ASITTCAEGI SLTAASRVIL LDSEWNPSKS KQAIARAFRP
1201: GQDKVVYVYQ LLATGTLEEE KYKRTTWKEW VSSMIFSEDL VEDPSHWQAP KIEDELLREI VEEDRATLFH AIMKNEKASN MGSLQE
0101: VWIDGKIRSI ERKPHELTCT CEFHVSVYVT QGPPPILKKT LSKEIKMLPI DQIAVLQKLE PKPCEDKHYR WSSSEDCNSL QTFKLFIGKF SSDLTWLMTA
0201: SVLKEATFDV RSIHNQIVYE IVDDDLVKKE SNPNQHSHSV NFKLEDGVQT TTVFQFSRDI PDVNSTSDLS EAGPLVLYDL MGPRRSKRRF VQPERYYGCD
0301: DDMAEFDVEM TRLVGGRRKV EYEELPLALS IQADHAYRTG EIDEIARSYK RELFGGSIRP HEKSSESSSG WRNALKSDVN KLADKKSVTA DSQHQLAIVP
0401: LHPSSGTDLT VHEQVPLDVD VPEHLSAEIG EIVSRYIYFN SSSTSHDRKA SKMNFTKPEA RRWGQVKISK LKFMGLDRRG GALGSHKKYK RNSSKKDSIY
0501: DIRSFKKGSV AANVYKELIR RCMANIDATL NKEQPPIIDQ WKEFQSTKSD HRESGDHLAM NRDEEVSEID MLWKEMELAL ASCYLLDDSE DSHVQYASNV
0601: RIGAEIRGEV CRHDYRLNEE IGIICRLCGF VSTEIKDVPP PFMPSSNYSS NKEQRTEEAT DHKQDDDGLD TLSIPVSSRA PSSSGGGEGN VWELIPDLGK
0701: KLRVHQKRAF EFLWKNIAGS IVPAEMQPES KERGGCVISH TPGAGKTLLI ISFLVSYLKL FPGSRPLVLA PKTTLYTWYK EVLKWKIPVP VYQIHGGQTF
0801: KGEVLREKVK LCPGLPRNQD VMHVLDCLEK MQMWLSQPSV LLMGYTSFLT LTREDSPYAH RKYMAQVLRH CPGLLILDEG HNPRSTKSRL RKGLMKVNTR
0901: LRILLSGTLF QNNFGEYFNT LTLARPTFVD EVLKELDPKY KKKNKGASRF SLENRARKMF IDKISTVIDS DIPKKRKEGL NILKKLTGGF IDVHDGGTSD
1001: NLPGLQCYTL MMKSTTLQQE ILVKLQNQRP IYKGFPLELE LLITLGAIHP WLIRTTACSS QYFKEEELEA LQKFKFDLKL GSKVKFVMSL IPRCLLRREK
1101: VLIFCHNIAP INLFLEIFER FYGWRKGIEV LVLQGDIELF QRGRIMDLFE EPGGPSKVML ASITTCAEGI SLTAASRVIL LDSEWNPSKS KQAIARAFRP
1201: GQDKVVYVYQ LLATGTLEEE KYKRTTWKEW VSSMIFSEDL VEDPSHWQAP KIEDELLREI VEEDRATLFH AIMKNEKASN MGSLQE
0001: MKKRGFYNLK HPFDPCPFEF FCSGTWKPVE YMRIEDGMMT IRLLENGYVL EDIRPFQRLR LRSRKAALSD CICFLRPDID VCVLYRIHED DLEPVWVDAR
0101: IVSIERKPHE SECSCKINVR IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS LGKFLPDLSW LTVTSTLKSI
0201: VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG
0301: WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF
0401: GLNANSFGGG GSFSRSQYFD ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR VYKKVTLSAG AYNKLIDTYM
0501: NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC
0601: CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP
0701: SLMDPTSGNI GGCVISHSPG AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF KQNKTVQFNG VPKPSRDVMH
0801: VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL
0901: ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH
1001: KILTKLQDVI KTYFGYPLEV ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK ILIFCHNIAP IRMFTELFEN
1101: IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED
1201: KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST G
0101: IVSIERKPHE SECSCKINVR IYIDQGCIGS EKQRINRDSV VIGLNQISIL QKFYKEQSTD QFYRWRFSED CTSLMKTRLS LGKFLPDLSW LTVTSTLKSI
0201: VFQIRTVQTK MVYQIVTDEE GSSSTLSSMN ITLEDGVSLS KVVKFNPADI LDDSQDLEIK QETDYYQEED EVVELRRSKR RNVRPDIYTG CDYEPDTIDG
0301: WVRMMPYQFG KCAVNVESDE DEDDNNEDGD TNDDLYIPLS RLFIKKKKTN SREAKPKSRK GEIVVIDKRR VHGFGRKERK SELSVIPFTP VFEPIPLEQF
0401: GLNANSFGGG GSFSRSQYFD ETEKYRSKGM KYGKKMTEME EMMEADLCWK GPNQVKSFQK RTSRSSRSVA PKTEDSDEPR VYKKVTLSAG AYNKLIDTYM
0501: NNIESTIAAK DEPTSVVDQW EELKKTNFAF KLHGDMEKNL SEDGEGETSE NEMLWREMEL CLASSYILDD NEVRVDNEAF EKARSGCEHD YRLEEEIGMC
0601: CRLCGHVGSE IKDVSAPFAE HKKWTIETKH IEEDDIKTKL SHKEAQTKDF SMISDSSEML AAEESDNVWA LIPKLKRKLH VHQRRAFEFL WRNVAGSVEP
0701: SLMDPTSGNI GGCVISHSPG AGKTFLIIAF LTSYLKLFPG KRPLVLAPKT TLYTWYKEFI KWEIPVPVHL IHGRRTYCTF KQNKTVQFNG VPKPSRDVMH
0801: VLDCLEKIQK WHAHPSVLVM GYTSFTTLMR EDSKFAHRKY MAKVLRESPG LLVLDEGHNP RSTKSRLRKA LMKVGTDLRI LLSGTLFQNN FCEYFNTLCL
0901: ARPKFIHEVL MELDQKFKTN HGVNKAPHLL ENRARKLFLD IIAKKIDASV GDERLQGLNM LKNMTNGFID NYEGSGSGSG DALPGLQIYT LVMNSTDIQH
1001: KILTKLQDVI KTYFGYPLEV ELQITLAAIH PWLVTSSNCC TKFFNPQELS EIGKLKHDAK KGSKVMFVLN LIFRVVKREK ILIFCHNIAP IRMFTELFEN
1101: IFRWQRGREI LTLTGDLELF ERGRVIDKFE EPGNPSRVLL ASITACAEGI SLTAASRVIM LDSEWNPSKT KQAIARAFRP GQQKVVYVYQ LLSRGTLEED
1201: KYRRTTWKEW VSCMIFSEEF VADPSLWQAE KIEDDILREI VGEDKVKSFH MIMKNEKAST G
Arabidopsis Description
CLSY2SNF2 domain-containing protein CLASSY 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K493]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.