Factsheet for PGSC0003DMT400076122

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78226	Canola	cytosol	21.76	85.41
KXG34530	Sorghum	endoplasmic reticulum, golgi, plasma membrane	18.18	75.43
Solyc08g074500.2.1	Tomato	cytosol, nucleus, plastid	98.62	56.47
VIT_15s0024g00350.t01	Wine grape	mitochondrion	83.75	30.07
KRH23760	Soybean	mitochondrion	81.27	28.82
KRH40039	Soybean	mitochondrion	80.99	28.73
Bra007061.1-P	Field mustard	mitochondrion	79.61	28.22
CDX73492	Canola	mitochondrion	79.34	27.68
AT3G54280.2	Thale cress	mitochondrion	79.34	27.05
GSMUA_Achr4P27500_001	Banana	mitochondrion	76.31	27.0
Zm00001d039160_P031	Maize	cytosol, mitochondrion, nucleus, plasma membrane	75.07	26.66
KXG22701	Sorghum	mitochondrion	75.21	26.66
TraesCS1D01G450200.1	Wheat	mitochondrion	74.1	26.0
TraesCS1B01G476500.1	Wheat	mitochondrion	74.1	26.0
TraesCS1A01G442400.2	Wheat	mitochondrion	74.1	26.0
HORVU1Hr1G094870.2	Barley	mitochondrion	73.69	25.86
PGSC0003DMT400033315	Potato	nucleus	4.55	22.76
CDX78225	Canola	mitochondrion	58.54	21.05
PGSC0003DMT400096321	Potato	nucleus	3.58	20.8
PGSC0003DMT400082782	Potato	plastid	23.69	19.37
PGSC0003DMT400085993	Potato	cytosol	4.13	17.86
PGSC0003DMT400017302	Potato	nucleus	14.46	16.85
PGSC0003DMT400088837	Potato	cytosol	4.27	16.4
PGSC0003DMT400090992	Potato	mitochondrion	5.37	15.92
PGSC0003DMT400085944	Potato	cytosol	4.82	14.89
PGSC0003DMT400026641	Potato	nucleus	24.38	14.59
PGSC0003DMT400004629	Potato	nucleus	15.98	13.0
PGSC0003DMT400004673	Potato	nucleus	14.6	11.57
PGSC0003DMT400079488	Potato	nucleus	14.19	11.14
PGSC0003DMT400004672	Potato	nucleus	14.46	10.55
PGSC0003DMT400017313	Potato	nucleus	16.25	9.79
PGSC0003DMT400038789	Potato	nucleus	13.77	9.04
PGSC0003DMT400037430	Potato	nucleus	7.71	8.33
PGSC0003DMT400061540	Potato	nucleus	14.74	8.32

Protein Annotations

MapMan:12.4.1.4.2	MapMan:15.3.5.7.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	InterPro:ARM-type_fold	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR038718	UniProt:M1CW81	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
EnsemblPlantsGene:PGSC0003DMG400029599	PGSC:PGSC0003DMG400029599	EnsemblPlants:PGSC0003DMT400076122	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF814	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF48371
SUPFAM:SSF52540	UniParc:UPI0002964631	SEG:seg	:	:	:

Description

Chromatin remodeling complex subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400029599]

Coordinates

chr8:-:45352610..45360963

Molecular Weight (calculated)

80874.6 Da

IEP (calculated)

6.629

GRAVY (calculated)

-0.126

Length

726 amino acids

Sequence
(BLAST)

001: MAKSMTLDVM GSVIENVVPM LGDITSVHSK QGAGMLVSLL VQGLGIELVP YAPLLVVPLL RCMSDSDPSV RQSVTHSFAT LVPLLPLARG VSPPVGLSEH
101: LSRSQEDVKF LEQLIDNSHI DDYKLSTELK VTLRRYQQEG INWLAFLKRF NLHGILCDDM GLGKTLQASA IVASDLAEHI ALNSSQDLPP SLIICPSTLV
201: GHWVYEIEKF IDGSLLTTLQ YVGSAQERSS LRSQFDQHNV IVTSYDVIRK DVDHLKQLFW NYCILDEGHI IKNSKSKITV AVKQLKAQHR LVLSGTPIQN
301: NVLDLWSLFD FLMPGFLGTE RQFHASYGKP LQAARDPKCS AKDAEAGVLA MEALHKQVMP FLLRRTKDEV LSDLPEKIIQ DRYCDLSPVQ LKLYEQFSGS
401: HVRQEISSMV KHNESDASQK NDLPKASSHV FQALQYLLKL CSHPLLVFGE RVSESLSSVV SELFSPGSDI VSELHQLHHS PKLVALQEIL SECGIGVDSG
501: SEGTICVGQH RVLIFAQHKA LLDIIERDLF QNHMKNVTYL RLDGSVEPEK RFDIVKAFNS DPTIDVLLLT THVGGLGLNL TSADTLVFME HDWNPMRDHQ
601: AMDRAHRLGQ RKVVNVHRLI MRGTLEEKVM SLQRFKVSVA NAVINSENAS LKTMNTDQLL DLFTSAESKK GAGRSKRTDE KSDVDSILPR SGKGLKAILG
701: GLEELWDQSQ YTEEYNLGQF LAKLNG

Best Arabidopsis Sequence Match ( AT3G54280.1 )
(BLAST)

0001: MAQQQSSRLN RLLTLLDTGS TQATRLTAAK QIGDIAKSHP QDLSSLLRKV LHHLRSKKWD TRVAAAHAIG AIVLNVKHPS LSELLNSLAT KLGEAGISDN
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE MIRDEDLIEQ KSNVPANGVG
0201: NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI
0401: GGDYDINVKD EDAEFLLPPV KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL DLVKQARHSW IKNFEFLQDC
0501: TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS
0601: DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES
0701: PYALSGLAPR LWPFTRHDIT SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE RVWRLLVQCP VDDLEDTAKF
0801: YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI
0901: FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA
1001: SQLLHTVETC HCFDKLLSTN KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN LHITVTSLVA AAVVWMSEFP
1101: ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE
1201: DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC
1301: VRHSHVAVRL AASRCVMTMA KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC MSDVDSSVRQ SVTRSFAALV
1401: PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS
1501: TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV
1601: KQLKAQHRLI LSGTPIQNNI MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL LRRTKEEVLS DLPEKIIQDR
1701: YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS
1801: PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN
1901: LTSADTLVFM EHDWNPMRDH QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGGSSKKG
2001: SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL TKLNG

Arabidopsis Description

RGD3ROOT GROWTH DEFECTIVE 3 [Source:UniProtKB/TrEMBL;Acc:F4JCU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.