CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40039	Soybean	mitochondrion	95.51	95.51
PGSC0003DMT400076122	Potato	cytosol, nucleus, plastid	28.82	81.27
KXG34530	Sorghum	endoplasmic reticulum, golgi, plasma membrane	6.45	75.43
VIT_15s0024g00350.t01	Wine grape	mitochondrion	74.11	75.02
Solyc08g074500.2.1	Tomato	cytosol, nucleus, plastid	45.77	73.9
Bra007061.1-P	Field mustard	mitochondrion	68.78	68.75
AT3G54280.2	Thale cress	mitochondrion	69.03	66.37
GSMUA_Achr4P27500_001	Banana	mitochondrion	65.95	65.79
KXG22701	Sorghum	mitochondrion	62.68	62.65
Zm00001d039160_P031	Maize	cytosol, mitochondrion, nucleus, plasma membrane	62.14	62.23
CDX78225	Canola	mitochondrion	61.31	62.16
TraesCS1D01G450200.1	Wheat	mitochondrion	62.38	61.72
TraesCS1B01G476500.1	Wheat	mitochondrion	62.38	61.72
TraesCS1A01G442400.2	Wheat	mitochondrion	62.24	61.58
HORVU1Hr1G094870.2	Barley	mitochondrion	62.04	61.38
KRH32203	Soybean	cytosol, mitochondrion, nucleus	4.3	31.88
KRH05276	Soybean	cytosol, nucleus	3.57	29.44
KRH25617	Soybean	nucleus	9.33	21.95
KRH59600	Soybean	cytosol, nucleus, plastid	8.35	21.81
KRH77966	Soybean	nucleus	8.89	20.22
KRH40956	Soybean	nucleus	10.11	20.1
KRH19578	Soybean	nucleus	10.8	18.04
KRH34128	Soybean	nucleus	9.28	16.83
KRG92726	Soybean	nucleus	11.19	15.42
KRH39939	Soybean	nucleus	4.4	14.59
KRH27453	Soybean	cytosol	5.86	13.59
KRH23851	Soybean	mitochondrion, nucleus	7.38	12.95
KRH46527	Soybean	nucleus	7.08	12.63
KRH46528	Soybean	cytosol, extracellular, nucleus	7.43	12.2
KRH20806	Soybean	cytosol	5.62	12.07
KRG88505	Soybean	endoplasmic reticulum, nucleus	7.08	12.03
KRH73247	Soybean	nucleus	7.08	11.07
KRG97679	Soybean	nucleus	6.6	10.93
KRH77275	Soybean	cytosol	0.0	0.0
KRH28211	Soybean	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100777977	MapMan:12.4.1.4.2	MapMan:15.3.5.7.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
EMBL:ACUP02007160	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:DUF3535	EnsemblPlantsGene:GLYMA_12G002300	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR011989	InterPro:IPR014001	InterPro:IPR038718	UniProt:K7LS80	ProteinID:KRH23759.1	EnsemblPlants:KRH23760
ProteinID:KRH23760	ProteinID:KRH23760.1	ProteinID:KRH23761.1	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271
PFAM:PF12054	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR36498	SMART:SM00487	SMART:SM00490
InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF48371	SUPFAM:SSF52540	UniParc:UPI000233D01F	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:172780..195559

Molecular Weight (calculated)

226739.0 Da

IEP (calculated)

5.894

GRAVY (calculated)

-0.122

Length

2047 amino acids

Sequence
(BLAST)

0001: MAQQSSRLQR LLTLLDTGSN QATRLTAARQ IGDIAKSHPQ DLTSLLKKVS QYLRSKNWDT RVAAAHAIGS IAENVKHISL TELFACVVSK MSENGISCSI
0101: EDLCAWPYLQ SKVTGSSFRS FDMNKVLEFG ALLASGGQEY DIGNDNIKNP KERLVRQKQN LRRRLGLDVC EQFMDISDVI RDEDLMASKS DSHLNGIDRR
0201: LFTSCSSHNI QKMVSNMVPS VKSKWPSARE LNLLKRKAKI NSKDQTKSWC EDGSTEVSGG QNLTSKGTCP DSVNYSKAFM SVNHDEDGIE HDGDGQWPFH
0301: TFVEQLIIDM FDPVWEVRHG SVMALREILA HQGASAGVFK PDSSMGGTLF IELEDKSIPN ILKREREIDL NMQVSADEFV SNLKRPKLED VSSSTSMDSV
0401: MTCNNEGDIE ISISSETHGF NLTLDYGNGQ FNGNSVDMDY SDGLRDACKE PANIEEQKGY SDDNKIPSGN ISVLRNLPQN CELMNSVKVA RGSWLRNCEF
0501: LQDCVIRFLC VLSLDRFGDY VSDQVVAPVR ETCAQALGAA FKYMHPALVN ETLNILLKMQ CRPEWEIRHG SLLGIKYLVA VRQEMLSDLL GRVLPACKSG
0601: LEDPDDDVRA VAADALIPAA SAIVSLQGQT LHSIVMLLWD ILLDLDDLSP STSSVMNLLA EIYSQEDMAP KMYTVFKLAD NQMENGVDGC YDVDGEENPY
0701: VLSTLAPRLW PFMRHTITSV RYSAIRTLER LLEAGYKRSM SELSSASFWP SFIFGDTLRI VFQNLLLETN EDILQCSERV WSLLVQCSVE DLEIAARSYV
0801: ASWIELASTP FGSALDASKM YWPVAFPRKS QIRAAAKMRA AKIENECGVD FSLDSIKGTI PPDRNGDVSM NSVKIVVGAE VDTSVTHTRV VTSTTLGIFA
0901: SKLPEGSLKY VIDPLWSSLT SLSGVQRQVA SMVLVSWFKE IKNRNSSKNL DGIPGALKDW LLDLLACSDP AFPTKDSILP YAELSRTYGK MRNEAGQLLN
1001: VVKSSGMFNE LLTATQIELD RLSVDDAIGF ASKIPALCND SSANESLGKN ITDDIESSKQ RLLTTSGYLK CVQSNLHVTV TSAVAAAVVW MSEFPTRLTP
1101: IILPLMASIK REQEEILQMK SAEALAELMY HCVARRPCPN DKLIKNICSL TCMDPSETPQ AKSLCTMESI DDQGLLSFRT PVSKQKSKVH VLAGEDRSKV
1201: EGFLSRRGSE LALRLLCEKF GASLFDKLPK LWDCLTEVLK PSSSESLLVT NEKPVTMSIE SVNDPQTLIN NIQVVRSVAP VLNEELKPKL LTLLPCIFKC
1301: VQHSHVAVRL AASRCITSMA QSMTVKVMGA VVENAIPMLE DASSVYARQG AGMLISFLVQ GLGVELVPYA PLLVVPLLRC MSDCDQSVRQ SVTHSFAALV
1401: PLLPLARGLP QPIGLGEGVS RNAEDLQFLE QLLDNSHIED YKLCTELKVT LRRYQQEGIN WLAFLKRFKL HGILCDDMGL GKTLQASAIV ASDIAEHRTS
1501: IGNEDLLPSL IICPSTLVGH WAFEIEKYID VSVISSLQYV GSAQERMLLR DHFCKHNVII TSYDVVRKDI DFLGQLLWNH CILDEGHIIK NAKSKVTLAV
1601: KQLKAQHRLI LSGTPIQNNI MDLWSLFDFL MPGFLGTERQ FQATYGKPLL AARDPKCSAR DAEAGALAME ALHKQVMPFL LRRTKDEVLS DLPEKIIQDR
1701: YCDLSPVQFK LYEQFSGSRA KQEMSSVVTT NESAAAEGSS NSTKASSHVF QALQYLLKLC SHPLLVIGEK IPDSLSTILS ELFPAGSDVI SELHKLYHSP
1801: KLVALHEILE ECGIGVDNSG SEGAVNVGQH RVLIFAQHKA FLDIIERDLF HTHMKSVTYL RLDGSVEPEK RFEIVKAFNS DPTIDVLLLT THVGGLGLNL
1901: TSADTLVFVE HDWNPMRDHQ AMDRAHRLGQ KKVVNVHRLI MRGTLEEKVM SLQRFKVSVA NAVINSENAS MKTMNTDQLL DLFASAETSK KGASVVKSPE
2001: NNSDGDAKLV GSGKGLKSIL GGLEELWDQS QYTEEYNLSL FLARLNG

Best Arabidopsis Sequence Match ( AT3G54280.1 )
(BLAST)

0001: MAQQQSSRLN RLLTLLDTGS TQATRLTAAK QIGDIAKSHP QDLSSLLRKV LHHLRSKKWD TRVAAAHAIG AIVLNVKHPS LSELLNSLAT KLGEAGISDN
0101: VDEVVAFRNL QSKILANAPF RSFEMNKVLE FGALLASGGQ EYDILNDNSK NPRDRVARQK KNLRRRLGLD MCEQFMDVNE MIRDEDLIEQ KSNVPANGVG
0201: NRLYANCSPH HIQQFVSRMV PRVNSRRPSA RELNLLKRKA KISSKDQAKG SCEVADVEMS SSHVASTSKR ILSDSLDSSK ADIGNEDDIE PDGDGKWPFH
0301: SFVEQLILDM FDPAWEIRHG SVMALREILM LHGGSAGVST EEFSSDNGFE LKDVLNKVTR EREIDLNMQV SENELEPLRK RPKIEDPSKS FIDNTVLEVI
0401: GGDYDINVKD EDAEFLLPPV KVNGQTDCSS TKLEPQSSMD DSTSHSEINH VAEVNNHFED KSFIEEPVIP KQQEENLEVL DLVKQARHSW IKNFEFLQDC
0501: TIRFLCVLSL DRFGDYISDQ VVAPVREACA QALGATFKYM NPSLIYETLN ILLQMQRRPE WEIRHGSLLG IKYLVAVRQE MLQDLLGYIL PACKAGLEDS
0601: DDDVRAVAAD ALIPAAAAIV SLRGQTLLSI VMLLWDILLE LDDLSPSTSS IMNLLAEIYS QDDMTLVMHE ELSLGEEQNI ELNEMGHIES IGERRDVKES
0701: PYALSGLAPR LWPFTRHDIT SVRFSAIRTL ERLLEAGCRK NISGQSKSSF WPSSILGDTL RIVFQNLLLE STEEILECSE RVWRLLVQCP VDDLEDTAKF
0801: YMASWIELAA TPYGSTLDAT KMFWPVAPPR KSHFKAAAKM KAVKLENEAS SILGFDYARS SASLEKQEDA SARSTKIIVG SDMEMSVTRT RVVTASALGI
0901: FASRLREGSM QFVVDPLSST LTSMSGVQRQ VGSIVLISWF RETKCKAPSD GSGSLPGFPS PLKKWLLDLL ACADPAFPTK DIFLPYAELS RTYTKMRNEA
1001: SQLLHTVETC HCFDKLLSTN KLNVESVTAD ETIDFASTLD LWNKESAGNE SLEKQVFEDV ESSRQQLLST AGYLKCVQSN LHITVTSLVA AAVVWMSEFP
1101: ARLNPIILPL MASIKREQEQ ILQQIAAEAL AELIAYCVDR KPSPNDKLIK NICSLTCMDP SETPQASIIS SMDIVDDMDF LSSRSNTGKQ KAKVVLASGE
1201: DRSKVEGFIT RRGSELALKH LSLKFGGSLF DKLPKLWECL TEVLVPEIPS DQQKIDLKIE SISDPQVLIN NIQVVRSIAP VMEETLKPRL LSLLPCIFKC
1301: VRHSHVAVRL AASRCVMTMA KSMTTDVMAA VVESAIPMLG DLTCISGRQG AGMLIGLLVQ GLGVELVPYS PLLVVPLLRC MSDVDSSVRQ SVTRSFAALV
1401: PMLPLARGVP PPVGLSKDLS SNAEDAKFLE QLLDNSHIDD YKLCTELKVQ LRRYQQEGIN WLGFLKRFKL HGILCDDMGL GKTLQASAIV ASDAAERRGS
1501: TDELDVFPSI IVCPSTLVGH WAFEIEKYID LSLLSVLQYV GSAQDRVSLR EQFNNHNVII TSYDVVRKDV DYLTQFSWNY CILDEGHIIK NAKSKITAAV
1601: KQLKAQHRLI LSGTPIQNNI MELWSLFDFL MPGFLGTERQ FQASYGKPLL AARDPKCSAK DAEAGVLAME ALHKQVMPFL LRRTKEEVLS DLPEKIIQDR
1701: YCDLSPVQLK LYEQFSGSSA KQEISSIIKV DGSADSGNAD VAPTKASTHV FQALQYLLKL CSHPLLVLGD KVTEPVASDL AAMINGCSDI ITELHKVQHS
1801: PKLVALQEIL EECGIGSDAS SSDGTLSVGQ HRVLIFAQHK ALLDIIEKDL FQAHMKSVTY MRLDGSVVPE KRFEIVKAFN SDPTIDVLLL TTHVGGLGLN
1901: LTSADTLVFM EHDWNPMRDH QAMDRAHRLG QKRVVNVHRL IMRGTLEEKV MSLQKFKVSV ANTVINAENA SMKTMNTDQL LDLFASAETS KKGGGSSKKG
2001: SEDNDQIAGT GKGMKAILGN LEELWDQSQY TEEYNLSQFL TKLNG

Arabidopsis Description

RGD3ROOT GROWTH DEFECTIVE 3 [Source:UniProtKB/TrEMBL;Acc:F4JCU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.