Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH77275 | Soybean | cytosol | 100.0 | 100.0 |
| KRH39939 | Soybean | nucleus | 7.61 | 1.13 |
| KRH46528 | Soybean | cytosol, extracellular, nucleus | 10.87 | 0.8 |
| GSMUA_Achr4P25070_001 | Banana | golgi | 2.17 | 0.79 |
| KRH23851 | Soybean | mitochondrion, nucleus | 8.7 | 0.69 |
| Os07t0692600-01 | Rice | mitochondrion | 3.26 | 0.63 |
| KRH46527 | Soybean | nucleus | 7.61 | 0.61 |
| KRH19578 | Soybean | nucleus | 6.52 | 0.49 |
| KRG88505 | Soybean | endoplasmic reticulum, nucleus | 5.43 | 0.41 |
| KRH73247 | Soybean | nucleus | 5.43 | 0.38 |
| KRH32203 | Soybean | cytosol, mitochondrion, nucleus | 1.09 | 0.36 |
| KRH77966 | Soybean | nucleus | 3.26 | 0.33 |
| KRG97679 | Soybean | nucleus | 4.35 | 0.32 |
| VIT_14s0036g01460.t01 | Wine grape | nucleus | 3.26 | 0.2 |
| TraesCS1D01G143000.1 | Wheat | nucleus | 3.26 | 0.2 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 3.26 | 0.2 |
| Bra018612.1-P | Field mustard | nucleus | 5.43 | 0.19 |
| TraesCS1B01G161400.5 | Wheat | nucleus | 3.26 | 0.19 |
| CDX95047 | Canola | nucleus | 2.17 | 0.14 |
| KXG38419 | Sorghum | nucleus | 2.17 | 0.13 |
| Zm00001d032801_P005 | Maize | nucleus | 2.17 | 0.13 |
| HORVU1Hr1G038370.1 | Barley | nucleus | 2.17 | 0.13 |
| CDX93550 | Canola | nucleus | 2.17 | 0.13 |
| KRH59600 | Soybean | cytosol, nucleus, plastid | 1.09 | 0.13 |
| KRH25617 | Soybean | nucleus | 1.09 | 0.11 |
| KRH27453 | Soybean | cytosol | 1.09 | 0.11 |
| KRH20806 | Soybean | cytosol | 1.09 | 0.1 |
| KRH40956 | Soybean | nucleus | 1.09 | 0.1 |
| KRH34128 | Soybean | nucleus | 1.09 | 0.09 |
| AT1G08600.3 | Thale cress | nucleus | 1.09 | 0.07 |
| KRG92726 | Soybean | nucleus | 1.09 | 0.07 |
| Os07t0692401-00 | Rice | mitochondrion | 0.0 | 0.0 |
| Solyc04g050160.2.1 | Tomato | nucleus | 0.0 | 0.0 |
| GSMUA_Achr4P25080_001 | Banana | nucleus | 0.0 | 0.0 |
| Os07t0692500-01 | Rice | cytosol | 0.0 | 0.0 |
| Os02t0161200-01 | Rice | nucleus | 0.0 | 0.0 |
| KRH40039 | Soybean | mitochondrion | 0.0 | 0.0 |
| KRH05276 | Soybean | cytosol, nucleus | 0.0 | 0.0 |
| KRH23760 | Soybean | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:100499850 | EntrezGene:100798254 | MapMan:17.1.2.1.40 | Gene3D:2.20.25.30 | EMBL:ACUP02000669 | EMBL:ACUP02006741 |
| EMBL:BT089826 | UniProt:C6SXD2 | EnsemblPlantsGene:GLYMA_11G039200 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR011331 |
| EnsemblPlants:KRH28211 | ProteinID:KRH28211 | ProteinID:KRH28211.1 | ProteinID:KRH77275.1 | HAMAP:MF_00327 | PFAM:PF01780 |
| PANTHER:PTHR43931 | PANTHER:PTHR43931:SF1 | InterPro:Ribosomal_L37ae | InterPro:Ribosomal_L37ae/L37e | InterPro:Ribosomal_zn-bd | SUPFAM:SSF57829 |
| TIGRFAMs:TIGR00280 | UniParc:UPI0001704D8D | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:2792861..2794460
Molecular Weight (calculated)
10211.6 Da
IEP (calculated)
10.960
GRAVY (calculated)
-0.543
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MTKRTKKAGI VGKYGTRYGA SLRKQIKKME VSQHSKFFCE FCGKYAVKRK AVGIWGCKDC GKVKAGGAYT LNTASAVTVR STIRRLREQT EG
1: MTKRTKKARI VGKYGTRYGA SLRKQIKKME VSQHNKYFCE FCGKYSVKRK VVGIWGCKDC GKVKAGGAYT MNTASAVTVR STIRRLREQT ES
Arabidopsis Description
RPL37ABPutative 60S ribosomal protein L37a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRK6]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.