Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G19210.1 | KRH02540 | AT5G20850.1 | 17227544 |
AT3G19210.1 | KRH19405 | AT5G20850.1 | 17227544 |
AT3G19210.1 | KRH02540 | AT5G20850.1 | 18430956 |
AT3G19210.1 | KRH19405 | AT5G20850.1 | 18430956 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX92308 | Canola | nucleus | 68.33 | 67.51 |
CDX99258 | Canola | nucleus | 67.89 | 67.36 |
Bra022395.1-P | Field mustard | nucleus | 68.33 | 67.36 |
AT3G19210.1 | Thale cress | nucleus | 68.0 | 67.25 |
HORVU1Hr1G071540.2 | Barley | nucleus | 20.0 | 65.93 |
Solyc04g056410.2.1 | Tomato | nucleus | 43.0 | 65.93 |
HORVU7Hr1G119270.3 | Barley | nucleus | 20.44 | 65.71 |
GSMUA_Achr5P24600_001 | Banana | nucleus | 66.33 | 63.92 |
VIT_03s0063g00580.t01 | Wine grape | nucleus | 68.78 | 63.29 |
EES07568 | Sorghum | nucleus | 66.33 | 61.55 |
TraesCS6A01G321200.1 | Wheat | nucleus | 66.11 | 61.15 |
Zm00001d018151_P003 | Maize | nucleus | 65.67 | 61.05 |
HORVU6Hr1G078680.2 | Barley | nucleus | 66.22 | 61.0 |
Solyc04g056400.2.1 | Tomato | cytosol, nucleus, plastid | 25.0 | 60.98 |
Os02t0762800-00 | Rice | nucleus | 66.33 | 60.92 |
TraesCS6B01G351900.1 | Wheat | nucleus | 66.0 | 59.22 |
TraesCS6D01G300900.1 | Wheat | cytosol | 66.22 | 56.28 |
KRH32203 | Soybean | cytosol, mitochondrion, nucleus | 10.44 | 34.06 |
KRH05276 | Soybean | cytosol, nucleus | 7.67 | 27.82 |
KRH59600 | Soybean | cytosol, nucleus, plastid | 19.67 | 22.58 |
KRH25617 | Soybean | nucleus | 20.11 | 20.8 |
KRH34128 | Soybean | nucleus | 22.22 | 17.71 |
KRH40956 | Soybean | nucleus | 19.56 | 17.09 |
KRH39939 | Soybean | nucleus | 11.0 | 16.05 |
KRH19578 | Soybean | nucleus | 21.33 | 15.67 |
KRH27453 | Soybean | cytosol | 13.78 | 14.04 |
KRG92726 | Soybean | nucleus | 23.11 | 14.01 |
KRH20806 | Soybean | cytosol | 13.67 | 12.91 |
KRH46527 | Soybean | nucleus | 14.22 | 11.15 |
KRH23851 | Soybean | mitochondrion, nucleus | 14.11 | 10.89 |
KRH46528 | Soybean | cytosol, extracellular, nucleus | 14.44 | 10.43 |
KRG97679 | Soybean | nucleus | 13.11 | 9.55 |
KRG88505 | Soybean | endoplasmic reticulum, nucleus | 12.67 | 9.46 |
KRH23760 | Soybean | mitochondrion | 20.22 | 8.89 |
KRH40039 | Soybean | mitochondrion | 20.0 | 8.79 |
KRH73247 | Soybean | nucleus | 12.78 | 8.78 |
KRH77275 | Soybean | cytosol | 0.33 | 3.26 |
KRH28211 | Soybean | mitochondrion | 0.33 | 3.26 |
Protein Annotations
Gene3D:1.20.120.850 | MapMan:12.4.1.3.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EMBL:ACUP02000686 | EnsemblPlantsGene:GLYMA_01G244700 |
GO:GO:0000166 | GO:GO:0000724 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 |
GO:GO:0006259 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009987 |
GO:GO:0010332 | GO:GO:0045003 | GO:GO:0051701 | GO:GO:0071248 | GO:GO:0071480 | InterPro:Helicase_ATP-bd |
InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:K7K5N1 | EnsemblPlants:KRH77966 |
ProteinID:KRH77966 | ProteinID:KRH77966.1 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 |
PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF889 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI0002949503 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:+:56700349..56720503
Molecular Weight (calculated)
100095.0 Da
IEP (calculated)
7.919
GRAVY (calculated)
-0.369
Length
900 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGGGGVSVR MEEEEDEVGW CSSDSGDGDG DDDIEERKSQ NVDALLRGNL VVKRQSLLPR LLSVSQGAAV CRKPFKPPCS KSHASASAYN QDLTRKLSAR
101: KRFVPWGSSS PIPIPIPRSA LDDSKFNVAV AVADVAEELK PSLPPGIDPL VLWHPQDSED ANANFTTITV DPLLVRYLRP HQREGVQFMF DCVSGLSTTP
201: NIHGCILADD MGLGKTLQSI TLLYTLLSQG FDGKPMVRKA IIVTPTSLVS NWEAEIKKWV GERVPLVALC ESTREDVISG IDNFTSPKSN LQVLIVSYET
301: FRMHSSKFSS TDSCDLLICD EAHRLKNDQT ITNRALAALP CKRRILLSGT PLQNDLEEFF AMVNFTNPGI LGDIAHFRRY YEAPIICGRE PAATAEEKKL
401: GAEQSAELSV NVNRFILRRT NALLSNHLPP KIVEVVCCKL TPLQSELYKH FIQSKNVKRA ITEELKQSKI LAYITALKKL CNHPKLIYDT IRSGSPGTSG
501: FEDCIRFFPP EMLSGRSGSW TGGHGAWVEL SGKMHVLARL LAHLRQRTND RIVLVSNYTQ TLDLFAQLCR ERRYPHLRLD GSTSISKRQK LVNCFNDPSK
601: DEFVFLLSSK AGGCGLNLIG GNRLVLFDPD WNPANDKQAA ARVWRDGQKK RVYIYRFLSA GTIEEKVYQR QMSKEGLQKV IQQEQTDSLV AQGNLLSTEN
701: LRDLFTFHEN IKSEIHENMQ CSRCQTFDGP RSTEAQSTIT DSESDEETSD IGGFAEIAGC LQNLKRSEKQ VGSPLEEDLG SWGHHFFPTS VPDAILQASA
801: GDEVTFVFTN QVNGRLVPVE SIMSPKLQQK DPKKELLKSK QNGKQKPTPF SLHNRLPLQS ASVGITKNIS MNVAFKPQYS LVSKVLPQKR SCPANINDDN
101: KRFVPWGSSS PIPIPIPRSA LDDSKFNVAV AVADVAEELK PSLPPGIDPL VLWHPQDSED ANANFTTITV DPLLVRYLRP HQREGVQFMF DCVSGLSTTP
201: NIHGCILADD MGLGKTLQSI TLLYTLLSQG FDGKPMVRKA IIVTPTSLVS NWEAEIKKWV GERVPLVALC ESTREDVISG IDNFTSPKSN LQVLIVSYET
301: FRMHSSKFSS TDSCDLLICD EAHRLKNDQT ITNRALAALP CKRRILLSGT PLQNDLEEFF AMVNFTNPGI LGDIAHFRRY YEAPIICGRE PAATAEEKKL
401: GAEQSAELSV NVNRFILRRT NALLSNHLPP KIVEVVCCKL TPLQSELYKH FIQSKNVKRA ITEELKQSKI LAYITALKKL CNHPKLIYDT IRSGSPGTSG
501: FEDCIRFFPP EMLSGRSGSW TGGHGAWVEL SGKMHVLARL LAHLRQRTND RIVLVSNYTQ TLDLFAQLCR ERRYPHLRLD GSTSISKRQK LVNCFNDPSK
601: DEFVFLLSSK AGGCGLNLIG GNRLVLFDPD WNPANDKQAA ARVWRDGQKK RVYIYRFLSA GTIEEKVYQR QMSKEGLQKV IQQEQTDSLV AQGNLLSTEN
701: LRDLFTFHEN IKSEIHENMQ CSRCQTFDGP RSTEAQSTIT DSESDEETSD IGGFAEIAGC LQNLKRSEKQ VGSPLEEDLG SWGHHFFPTS VPDAILQASA
801: GDEVTFVFTN QVNGRLVPVE SIMSPKLQQK DPKKELLKSK QNGKQKPTPF SLHNRLPLQS ASVGITKNIS MNVAFKPQYS LVSKVLPQKR SCPANINDDN
001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV
Arabidopsis Description
CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.