Factsheet for HORVU1Hr1G071540.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G091450.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19210.1	HORVU7Hr1G091450.2	AT5G20850.1	17227544
AT3G19210.1	HORVU7Hr1G091450.2	AT5G20850.1	18430956

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G119270.3	Barley	nucleus	98.17	95.71
Solyc04g056400.2.1	Tomato	cytosol, nucleus, plastid	43.22	31.98
HORVU6Hr1G078680.2	Barley	nucleus	83.88	23.44
TraesCS6A01G321200.1	Wheat	nucleus	83.15	23.33
TraesCS6B01G351900.1	Wheat	nucleus	82.42	22.43
Zm00001d018151_P003	Maize	nucleus	77.66	21.9
EES07568	Sorghum	nucleus	77.66	21.86
TraesCS6D01G300900.1	Wheat	cytosol	83.15	21.44
Os02t0762800-00	Rice	nucleus	76.92	21.43
HORVU1Hr1G064000.1	Barley	cytosol, nucleus	24.18	20.62
GSMUA_Achr5P24600_001	Banana	nucleus	68.5	20.02
KRH77966	Soybean	nucleus	65.93	20.0
CDX99258	Canola	nucleus	65.57	19.74
CDX92308	Canola	nucleus	65.57	19.65
Bra022395.1-P	Field mustard	nucleus	65.57	19.61
AT3G19210.1	Thale cress	nucleus	65.2	19.56
HORVU6Hr1G021370.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	16.48	18.75
VIT_03s0063g00580.t01	Wine grape	nucleus	67.03	18.71
Solyc04g056410.2.1	Tomato	nucleus	18.68	8.69
HORVU6Hr1G061730.1	Barley	cytosol, nucleus	10.99	8.5
HORVU2Hr1G037590.4	Barley	plastid	24.54	7.64
HORVU2Hr1G127340.1	Barley	cytosol	27.84	6.87
HORVU5Hr1G085320.1	Barley	plastid	20.88	5.85
HORVU2Hr1G034330.2	Barley	mitochondrion, nucleus, plastid	20.15	5.64
HORVU4Hr1G074230.3	Barley	nucleus, plastid	20.15	5.36
HORVU6Hr1G061720.1	Barley	cytosol	6.59	5.07
HORVU1Hr1G038370.1	Barley	nucleus	27.11	4.97
HORVU3Hr1G014660.2	Barley	nucleus	21.98	4.92
HORVU3Hr1G054100.2	Barley	nucleus	17.95	3.85
HORVU2Hr1G014660.2	Barley	nucleus	17.22	3.72
HORVU1Hr1G062970.3	Barley	mitochondrion	18.32	3.37
HORVU1Hr1G094870.2	Barley	mitochondrion	21.25	2.8
HORVU2Hr1G024970.1	Barley	nucleus	2.93	2.45
HORVU6Hr1G021360.1	Barley	cytosol, mitochondrion, nucleus	1.47	1.78
HORVU3Hr1G014620.1	Barley	nucleus	0.0	0.0
HORVU3Hr1G014630.1	Barley	cytosol, nucleus, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU1Hr1G071540.2	EnsemblPlantsGene:HORVU1Hr1G071540	Gene3D:3.40.50.10810	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:IPR014001	InterPro:IPR038718	InterPro:P-loop_NTPase	InterPro:SNF2-like_sf
InterPro:SNF2_N	PANTHER:PTHR10799	PANTHER:PTHR10799:SF889	PFAM:PF00176	PFscan:PS51192	SEG:seg
SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI000B486B2A	UniProt:A0A287G5J2	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr1H:+:493461236..493464788

Molecular Weight (calculated)

30299.9 Da

IEP (calculated)

8.377

GRAVY (calculated)

-0.001

Length

273 amino acids

Sequence
(BLAST)

001: MFDCVSGLLS DDGIVGCILV DDMGSGKTLQ SLTLLYTLLA QGFEGKPMVK RVVIVTPTSL VSNWESEISK WLKGKVHLLA LCESTRADVL FGIGSFLKPL
101: SHLQVLIISY ETFRMHSSKF EIPGSCDLLI CDEAHRLKNI QTLTNKSLAA LPCTRRILLS GTPMQNDLEE FFSMVNFTNP GVLGDAAYFR RYYEAPIIRG
201: RELTATAEEK KLGSERSLIP SFTTSAGMTS PWAPRRRRSL PLPMPLAQVS VSNHFQPNQA TNLLLHQQHS QVT

Best Arabidopsis Sequence Match ( AT3G19210.1 )
(BLAST)

001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV

Arabidopsis Description

CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.