Factsheet for HORVU2Hr1G024970.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G164300.3	Wheat	nucleus	90.52	30.96
TraesCS2A01G140400.2	Wheat	cytosol	89.6	30.65
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	52.91	25.4
HORVU6Hr1G061730.1	Barley	cytosol, nucleus	25.99	24.08
HORVU4Hr1G074230.3	Barley	nucleus, plastid	72.48	23.1
EER92800	Sorghum	nucleus, plastid	65.14	22.54
Os03t0165266-00	Rice	nucleus	69.11	21.04
Bra021841.1-P	Field mustard	cytosol	45.26	19.37
KRH27453	Soybean	cytosol	51.68	19.14
AT2G16390.2	Thale cress	nucleus	49.54	18.18
CDX89710	Canola	nucleus	46.79	17.71
Solyc01g109970.2.1	Tomato	extracellular	48.32	17.42
KRH20806	Soybean	cytosol	50.46	17.31
PGSC0003DMT400079488	Potato	nucleus	48.01	16.97
VIT_03s0038g00030.t01	Wine grape	nucleus	48.93	16.82
HORVU2Hr1G034330.2	Barley	mitochondrion, nucleus, plastid	49.24	16.51
HORVU6Hr1G021360.1	Barley	cytosol, mitochondrion, nucleus	11.31	16.44
HORVU5Hr1G085320.1	Barley	plastid	48.01	16.1
GSMUA_Achr6P04530_001	Banana	nucleus	37.61	13.87
HORVU2Hr1G037590.4	Barley	plastid	22.32	8.32
HORVU2Hr1G014660.2	Barley	nucleus	28.75	7.44
HORVU3Hr1G054100.2	Barley	nucleus	28.75	7.39
HORVU1Hr1G062970.3	Barley	mitochondrion	27.52	6.07
HORVU2Hr1G127340.1	Barley	cytosol	20.49	6.05
HORVU6Hr1G078680.2	Barley	nucleus	16.82	5.63
HORVU3Hr1G014660.2	Barley	nucleus	20.8	5.57
HORVU6Hr1G021370.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	3.98	5.42
HORVU1Hr1G038370.1	Barley	nucleus	21.1	4.64
HORVU1Hr1G071540.2	Barley	nucleus	2.45	2.93
HORVU7Hr1G119270.3	Barley	nucleus	2.45	2.86
VIT_03s0038g04290.t01	Wine grape	nucleus	1.83	2.71
HORVU1Hr1G064000.1	Barley	cytosol, nucleus	2.45	2.5
HORVU1Hr1G094870.2	Barley	mitochondrion	15.6	2.46
HORVU3Hr1G014630.1	Barley	cytosol, nucleus, plastid	1.83	1.98
TraesCS2D01G143100.1	Wheat	cytosol	2.75	1.45
Bra000888.1-P	Field mustard	cytosol	1.53	1.09
HORVU6Hr1G061720.1	Barley	cytosol	0.0	0.0
HORVU3Hr1G014620.1	Barley	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:HORVU2Hr1G024970.1	EnsemblPlantsGene:HORVU2Hr1G024970	Gene3D:3.40.50.300	InterPro:Helicase_C	InterPro:IPR001650	InterPro:P-loop_NTPase
PANTHER:PTHR10799	PANTHER:PTHR10799:SF799	PFAM:PF00271	PFscan:PS51194	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI000B47CC4D	UniProt:A0A287HEP8	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:76561171..76563586

Molecular Weight (calculated)

37073.9 Da

IEP (calculated)

6.523

GRAVY (calculated)

-0.210

Length

327 amino acids

Sequence
(BLAST)

001: MLGKNARSKN ILDKFCDLVE ENLQKDANDK MRAMIIQSLR ELTANVLHYY QGELSEELPG LLDLTVFLKM STEQEEILRA LVGLVKFSKS AKCSAVSLHP
101: CLKDIQNIKD KNRDVVVEKI GSIMRGIDIK VGAKAKFIYN MLSLSVAAGE KVLVFSRYIY SNIFLEMLVI REKGWIPEVH IFSMTDESTP DQRHKVVERF
201: NQSPDAKVFF GSIKACGEGI SLVGASRVII LDVHENPSVM RQAIGRAFRP GQSKMVYCYR LVAANSPEEE DHNAAFRKEW VSKMWFESDE LCENDGFELA
301: AVDVSESGDR FLEGEALRQD IKSMYKR

Best Arabidopsis Sequence Match ( AT2G16390.1 )
(BLAST)

001: MGFVYIVMTG YYKNVHKRKQ NQVDDGPEAK RVKSSAKVID YSNPFAVSNM LEALDSGKFG SVSKELEEIA DMRMDLVKRS IWLYPSLAYT VFEAEKTMDN
101: QQVVEGVINL DDDDDDDTDV EKKALCVVPS SSEIVLLDSD DEDNERQRPM YQFQSTLVQH QKNQGDVTPL IPQCSFEEVD LGRGKEMPSA IKAIVEGQTS
201: RGKVLPIENG VVNEKGVYVG VEEDDSDNES EAADEDLGNI WNEMALSIEC SKDVARETSH KEKADVVEDC EHSFILKDDM GYVCRVCGVI EKSILEIIDV
301: QFTKAKRNTR TYASETRTKR FGESDNELKF SEEGLMIGGL AAHPTHAAEM KPHQIEGFQF LCSNLVADDP GGCIMAHAPG SGKTFMIISF MQSFLAKYPQ
401: AKPLVVLPKG ILPTWKKEFV RWQVEDIPLL DFYSAKAENR AQQLSILKQW MEKKSILFLG YQQFSTIVCD DTTDSLSCQE ILLKVPSILI LDEGHTPRNE
501: DTNLLQSLAQ VQTPRKVVLS GTLYQNHVKE VFNILNLVRP KFLKLDTSKS AVKRILAYTP CDVRGRLTGS NSDMASMFNE TVEHTLQKSE DFTVKIKVIQ
601: DLREMTKKVL HYYKGDFLDE LPGLADFTVV LNLSPKQLNE VKKLRREKRK FKVSAVGSAI YLHPKLKVFS DKSDDVSDTT MDEMVEKLDL NEGVKAKFFL
701: NLINLCDSAG EKLLVFSQYL IPLKFLERLA ALAKGWKLGK EVFVLTGNTS SEQREWSMET FNSSPDAKIF FGSIKACGEG ISLVGASRIL ILDVPLNPSV
801: TRQAIGRAFR PGQKKMVHAY RLIAGSSPEE EDHNTCFKKE VISKMWFEWN EYCGYQNFEV ETIDVDEAGD TFLESPALRE DIRVLYKR

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.