Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU7Hr1G091450.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19210.1 | HORVU7Hr1G091450.2 | AT5G20850.1 | 17227544 |
| AT3G19210.1 | HORVU7Hr1G091450.2 | AT5G20850.1 | 18430956 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G321200.1 | Wheat | nucleus | 96.62 | 97.02 |
| TraesCS6B01G351900.1 | Wheat | nucleus | 95.8 | 93.32 |
| TraesCS6D01G300900.1 | Wheat | cytosol | 96.42 | 88.95 |
| EES07568 | Sorghum | nucleus | 83.62 | 84.23 |
| HORVU1Hr1G071540.2 | Barley | nucleus | 23.44 | 83.88 |
| HORVU7Hr1G119270.3 | Barley | nucleus | 23.95 | 83.57 |
| Zm00001d018151_P003 | Maize | nucleus | 81.68 | 82.44 |
| Os02t0762800-00 | Rice | nucleus | 82.19 | 81.94 |
| GSMUA_Achr5P24600_001 | Banana | nucleus | 65.2 | 68.2 |
| KRH77966 | Soybean | nucleus | 61.0 | 66.22 |
| AT3G19210.1 | Thale cress | nucleus | 60.8 | 65.27 |
| CDX92308 | Canola | nucleus | 60.59 | 64.98 |
| Bra022395.1-P | Field mustard | nucleus | 60.7 | 64.95 |
| CDX99258 | Canola | nucleus | 60.18 | 64.83 |
| Solyc04g056400.2.1 | Tomato | cytosol, nucleus, plastid | 24.05 | 63.69 |
| Solyc04g056410.2.1 | Tomato | nucleus | 38.08 | 63.37 |
| VIT_03s0063g00580.t01 | Wine grape | nucleus | 59.37 | 59.3 |
| HORVU6Hr1G021370.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 6.65 | 27.08 |
| HORVU6Hr1G061730.1 | Barley | cytosol, nucleus | 8.8 | 24.36 |
| HORVU6Hr1G021360.1 | Barley | cytosol, mitochondrion, nucleus | 5.32 | 23.11 |
| HORVU1Hr1G064000.1 | Barley | cytosol, nucleus | 7.47 | 22.81 |
| HORVU2Hr1G037590.4 | Barley | plastid | 18.73 | 20.87 |
| HORVU2Hr1G024970.1 | Barley | nucleus | 5.63 | 16.82 |
| HORVU2Hr1G127340.1 | Barley | cytosol | 18.22 | 16.08 |
| HORVU3Hr1G014660.2 | Barley | nucleus | 19.75 | 15.82 |
| HORVU1Hr1G038370.1 | Barley | nucleus | 21.6 | 14.18 |
| HORVU5Hr1G085320.1 | Barley | plastid | 12.9 | 12.92 |
| HORVU2Hr1G034330.2 | Barley | mitochondrion, nucleus, plastid | 12.28 | 12.31 |
| HORVU4Hr1G074230.3 | Barley | nucleus, plastid | 12.38 | 11.79 |
| HORVU3Hr1G054100.2 | Barley | nucleus | 13.2 | 10.14 |
| HORVU2Hr1G014660.2 | Barley | nucleus | 12.49 | 9.65 |
| HORVU1Hr1G062970.3 | Barley | mitochondrion | 13.82 | 9.11 |
| HORVU1Hr1G094870.2 | Barley | mitochondrion | 18.94 | 8.94 |
| HORVU6Hr1G061720.1 | Barley | cytosol | 3.07 | 8.45 |
| HORVU3Hr1G014620.1 | Barley | nucleus | 0.61 | 5.56 |
| HORVU3Hr1G014630.1 | Barley | cytosol, nucleus, plastid | 1.54 | 4.95 |
Protein Annotations
| Gene3D:1.20.120.850 | MapMan:12.4.1.3.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | UniProt:A0A287UTV6 | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:HORVU6Hr1G078680 | EnsemblPlants:HORVU6Hr1G078680.2 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF889 |
| SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI000B462984 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:535564402..535580115
Molecular Weight (calculated)
108481.0 Da
IEP (calculated)
6.364
GRAVY (calculated)
-0.524
Length
977 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSRSKRDCL GSDSDEEEEE EVVTLSSDES GSEAERGAEA ADDDDDEYVA DSSDAGGVED EAEEVGDGDD GDGDGGRPVR GGGPVRGGRR GAAEPDEERK
101: SQNVDALVRG NLVVRRQPLI PRILSVSDAA AIARKPFKPP CGNGYSENSE LLARRLSARK RFVPWGSVQP FAVPNNLQQL PTIVSDDSSE KEEPLPPGIE
201: PLVLWQPEEC DKENNNFTAI EVDHLLVRYL RPHQREGVQF MFDCVSGLLS DDGIAGCILA DDMGLGKTLQ SITLLYTLLA QGFEGKPMVK RAVIVTPTSL
301: VSNWESEISK WLKGKVHLLA LCESTRADVL SGIGSFLKPL SRLQVLIISY ETFRMHSSKF EIPGSCDLLI CDEAHRLKND QTLTNKSLAA LPCTRRILLS
401: GTPMQNDLEE FFSMVNFTNP GVLGDAAYFR RYYEAPIIRG REPTATAEEK KLGSERSGEL SAKVNQFILR RTNALLSNHL PPKIVEVVCC KLTPLQMTLY
501: NHFIHSKNVK RLISEEAKGS KVLAYITALK KLCNHPKLIY DTIKSSKSGG SGFDDCLRFF PPELFQGRSG SWTGGGGMWV ELSGKMHVLA RLLGHLRLKT
601: DDRIVLVSNY TQTLDLFAQL CRERRYPYVR LDGSTSINKR QKLVNQFNDL SRDEFAFLLS SKAGGCGLNL VGGNRLVLFD PDWNPANDKQ AAARVWRDGQ
701: KKRVYIYRFL STGTIEEKVY QRQMAKEGLQ RVIQQEQADD KIQDQGNSLS TEDLRDLFTL HDQVRSEIHE NLKCDRCNKD HCMPLDGNGL DLNATKHNTV
801: STSKEKLYTD IGGFREISGC VQKMNSSNRQ IEQPSEEDLQ SWGHHSDSST VPDTILQCSA GDEVSFVFTN QVDGKLVPVE SMVRSTAHQP NGVTASGEKE
901: AVKINSPRKP GRQSLLGKNL KMMGFNLKNS SLRSRTESKR TSPVCLQPLK KTNPSSDHQP QTKRLHVASD ISDDDFV
101: SQNVDALVRG NLVVRRQPLI PRILSVSDAA AIARKPFKPP CGNGYSENSE LLARRLSARK RFVPWGSVQP FAVPNNLQQL PTIVSDDSSE KEEPLPPGIE
201: PLVLWQPEEC DKENNNFTAI EVDHLLVRYL RPHQREGVQF MFDCVSGLLS DDGIAGCILA DDMGLGKTLQ SITLLYTLLA QGFEGKPMVK RAVIVTPTSL
301: VSNWESEISK WLKGKVHLLA LCESTRADVL SGIGSFLKPL SRLQVLIISY ETFRMHSSKF EIPGSCDLLI CDEAHRLKND QTLTNKSLAA LPCTRRILLS
401: GTPMQNDLEE FFSMVNFTNP GVLGDAAYFR RYYEAPIIRG REPTATAEEK KLGSERSGEL SAKVNQFILR RTNALLSNHL PPKIVEVVCC KLTPLQMTLY
501: NHFIHSKNVK RLISEEAKGS KVLAYITALK KLCNHPKLIY DTIKSSKSGG SGFDDCLRFF PPELFQGRSG SWTGGGGMWV ELSGKMHVLA RLLGHLRLKT
601: DDRIVLVSNY TQTLDLFAQL CRERRYPYVR LDGSTSINKR QKLVNQFNDL SRDEFAFLLS SKAGGCGLNL VGGNRLVLFD PDWNPANDKQ AAARVWRDGQ
701: KKRVYIYRFL STGTIEEKVY QRQMAKEGLQ RVIQQEQADD KIQDQGNSLS TEDLRDLFTL HDQVRSEIHE NLKCDRCNKD HCMPLDGNGL DLNATKHNTV
801: STSKEKLYTD IGGFREISGC VQKMNSSNRQ IEQPSEEDLQ SWGHHSDSST VPDTILQCSA GDEVSFVFTN QVDGKLVPVE SMVRSTAHQP NGVTASGEKE
901: AVKINSPRKP GRQSLLGKNL KMMGFNLKNS SLRSRTESKR TSPVCLQPLK KTNPSSDHQP QTKRLHVASD ISDDDFV
001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV
Arabidopsis Description
CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.