Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G384800.1 | |
| TraesCS7B01G287700.1 | |
| TraesCS7D01G381300.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G321200.1 | Wheat | nucleus | 90.84 | 98.87 |
| HORVU6Hr1G078680.2 | Barley | nucleus | 88.95 | 96.42 |
| TraesCS6B01G351900.1 | Wheat | nucleus | 89.24 | 94.22 |
| EES07568 | Sorghum | nucleus | 77.15 | 84.23 |
| HORVU1Hr1G071540.2 | Barley | nucleus | 21.44 | 83.15 |
| HORVU7Hr1G119270.3 | Barley | nucleus | 21.91 | 82.86 |
| Zm00001d018151_P003 | Maize | nucleus | 75.54 | 82.64 |
| Os02t0762800-00 | Rice | nucleus | 76.3 | 82.45 |
| GSMUA_Achr5P24600_001 | Banana | nucleus | 59.77 | 67.77 |
| KRH77966 | Soybean | nucleus | 56.28 | 66.22 |
| AT3G19210.1 | Thale cress | nucleus | 55.34 | 64.4 |
| CDX92308 | Canola | nucleus | 55.34 | 64.32 |
| Bra022395.1-P | Field mustard | nucleus | 55.34 | 64.18 |
| CDX99258 | Canola | nucleus | 54.86 | 64.06 |
| Solyc04g056400.2.1 | Tomato | cytosol, nucleus, plastid | 22.29 | 63.96 |
| Solyc04g056410.2.1 | Tomato | nucleus | 34.56 | 62.35 |
| VIT_03s0063g00580.t01 | Wine grape | nucleus | 55.05 | 59.61 |
| TraesCS1D01G263000.1 | Wheat | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 15.11 | 23.84 |
| TraesCS2D01G202400.1 | Wheat | plastid | 17.47 | 21.34 |
| TraesCS7D01G144700.1 | Wheat | cytosol | 12.94 | 20.51 |
| TraesCS6D01G107800.1 | Wheat | endoplasmic reticulum | 6.23 | 20.18 |
| TraesCS2D01G568400.1 | Wheat | cytosol | 17.37 | 19.27 |
| TraesCS3D01G082200.2 | Wheat | nucleus | 18.51 | 16.05 |
| TraesCS1D01G143000.1 | Wheat | nucleus | 19.83 | 14.07 |
| TraesCS5D01G344400.1 | Wheat | nucleus | 11.8 | 13.05 |
| TraesCS4D01G279200.1 | Wheat | cytosol | 11.24 | 12.51 |
| TraesCS2D01G189900.1 | Wheat | nucleus | 11.24 | 12.5 |
| TraesCS2D01G053900.1 | Wheat | nucleus | 11.8 | 11.51 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 12.18 | 10.16 |
| TraesCS2D01G087600.1 | Wheat | nucleus | 11.71 | 9.87 |
| TraesCS1D01G245400.1 | Wheat | nucleus | 12.94 | 9.23 |
| TraesCS2D01G143100.1 | Wheat | cytosol | 5.38 | 9.19 |
| TraesCS1D01G450200.1 | Wheat | mitochondrion | 17.56 | 8.99 |
Protein Annotations
| Gene3D:1.20.120.850 | MapMan:12.4.1.3.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF889 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS6D01G300900 | EnsemblPlants:TraesCS6D01G300900.1 | TIGR:cd00046 | TIGR:cd00079 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:410392263..410401503
Molecular Weight (calculated)
109042.0 Da
IEP (calculated)
6.364
GRAVY (calculated)
-0.512
Length
1059 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPPRSKRDRR DSDSEEEEEE VVTLSSDPDE SESEAERGAE AADDDDDGEY VADSSDAGGV EDEAEEGGDS DDGDGDGGRP VRGGRRGAAE PDEERKSQNV
0101: DALVRGNLVV RRQPLIPRIL SVSDAAAIAR KPFKPPCGNG YSENSELLAR RLSARKRFVP WGSAQPFAVP NNLQQLPTIA SDDSSEKEEP LPPGIEPLIL
0201: WQPEECDKEN NNFTAIEVDH LLVRYLRPHQ REGVQFMFDC VSGLLSDDGI AGCILADDMG LGKTLQSITL LYTLLAQGFE GKPMVKRAVI VTPTSLVSNW
0301: ESEISKWLKG KVHLLALCES TRADVLSGIG SFLKPLSRLQ VLIVSYETFR MHSSKFEIPG SCDLLICDEA HRLKNDQTLT NKALAALPCT RRILLSGTPM
0401: QNDLEEFFSM VNFTNPGVLG DAAYFRRYYE APIIRGREPT ATAEEKKLGS ERSGQLSAKV NQFILRRTNA LLSNHLPPKI VEVVCCKLTP LQMTLYNHFI
0501: HSKNVKRLIS EEAKSSKVLA YITALKKLCN HPKLIYDTIK SSKSGGSGFD DCLRFFPPEL FQGRSGSWTG GGGMWVELSG KMHVLARLLG HLRLKTDDRI
0601: VLVSNYTQTL DLFAQLCRER RYPYVRLDGS TSINKRQKLV NQFNDLSRDE FAFLLSSKAG GCGLNLVGGN RLVLFDPDWN PANDKQAAAR VWRDGQKKRV
0701: YIYRFLSTGT IEEKVYQRQM AKEGLQRVIQ QEQADDKMQD QGNSLSTEDL RDLFTLHDQV RSEIHENLKC DRCNKDHCMP LDGNGLDLDA AKHDTVSTSK
0801: EKLYTDIGGF REISGCVQKM NCSNQQIEQP SEEDLRSWGH HSDPSTVPDT ILQCSAGDEV SFVFTNQVDG KLVPVESMVR STAHQPNGVT ANGEKEAVKI
0901: NSPRKPGRQS LLGKNLKMMG FNLKNSSLRS PTESKRTSPV CLQPLKKTNP SSDHQPQTKR LHVASDISDX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXN AYQVYLFKN
0101: DALVRGNLVV RRQPLIPRIL SVSDAAAIAR KPFKPPCGNG YSENSELLAR RLSARKRFVP WGSAQPFAVP NNLQQLPTIA SDDSSEKEEP LPPGIEPLIL
0201: WQPEECDKEN NNFTAIEVDH LLVRYLRPHQ REGVQFMFDC VSGLLSDDGI AGCILADDMG LGKTLQSITL LYTLLAQGFE GKPMVKRAVI VTPTSLVSNW
0301: ESEISKWLKG KVHLLALCES TRADVLSGIG SFLKPLSRLQ VLIVSYETFR MHSSKFEIPG SCDLLICDEA HRLKNDQTLT NKALAALPCT RRILLSGTPM
0401: QNDLEEFFSM VNFTNPGVLG DAAYFRRYYE APIIRGREPT ATAEEKKLGS ERSGQLSAKV NQFILRRTNA LLSNHLPPKI VEVVCCKLTP LQMTLYNHFI
0501: HSKNVKRLIS EEAKSSKVLA YITALKKLCN HPKLIYDTIK SSKSGGSGFD DCLRFFPPEL FQGRSGSWTG GGGMWVELSG KMHVLARLLG HLRLKTDDRI
0601: VLVSNYTQTL DLFAQLCRER RYPYVRLDGS TSINKRQKLV NQFNDLSRDE FAFLLSSKAG GCGLNLVGGN RLVLFDPDWN PANDKQAAAR VWRDGQKKRV
0701: YIYRFLSTGT IEEKVYQRQM AKEGLQRVIQ QEQADDKMQD QGNSLSTEDL RDLFTLHDQV RSEIHENLKC DRCNKDHCMP LDGNGLDLDA AKHDTVSTSK
0801: EKLYTDIGGF REISGCVQKM NCSNQQIEQP SEEDLRSWGH HSDPSTVPDT ILQCSAGDEV SFVFTNQVDG KLVPVESMVR STAHQPNGVT ANGEKEAVKI
0901: NSPRKPGRQS LLGKNLKMMG FNLKNSSLRS PTESKRTSPV CLQPLKKTNP SSDHQPQTKR LHVASDISDX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
1001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXN AYQVYLFKN
001: MEEEDEEILS SSDCDDSSDS YKDDSQDSEG ENDNPECEDL AVVSLSSDAD RKSKNVKDLL RGNLVVQRQP LLPRVLSVSD GAAVCRKPFK PPCSHGYDST
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV
101: GQLSRRLSAR KRFVPWGSST PVVVALPTKL EASTNIERDE EEEVVCLPPD IEPLVLWQSE EDGMSNVTTI MVHSVLVKFL RPHQREGVQF MFDCVSGLHG
201: SANINGCILA DDMGLGKTLQ SITLLYTLLC QGFDGTPMVK KAIIVTPTSL VSNWEAEIKK WVGDRIQLIA LCESTRDDVL SGIDSFTRPR SALQVLIISY
301: ETFRMHSSKF CQSESCDLLI CDEAHRLKND QTLTNRALAS LTCKRRVLLS GTPMQNDLEE FFAMVNFTNP GSLGDAAHFR HYYEAPIICG REPTATEEEK
401: NLAADRSAEL SSKVNQFILR RTNALLSNHL PPKIIEVVCC KMTTLQSTLY NHFISSKNLK RALADNAKQT KVLAYITALK KLCNHPKLIY DTIKSGNPGT
501: VGFENCLEFF PAEMFSGRSG AWTGGDGAWV ELSGKMHVLS RLLANLRRKT DDRIVLVSNY TQTLDLFAQL CRERRYPFLR LDGSTTISKR QKLVNRLNDP
601: TKDEFAFLLS SKAGGCGLNL IGANRLVLFD PDWNPANDKQ AAARVWRDGQ KKRVYVYRFL STGTIEEKVY QRQMSKEGLQ KVIQHEQTDN STRQGNLLST
701: EDLRDLFSFH GDVRSEIHEK MSCSRCQNDA SGTENIEEGN ENNVDDNACQ IDQEDIGGFA KDAGCFNLLK NSERQVGTPL EEDLGSWGHH FTSKSVPDAI
801: LQASAGDEVT FVFTNQVDGK LVPIESNVSP KTVESEEHNR NQPVNKRAFN KPQQRPREPL QPLSLNETTK RVKLSTYKRL HGNSNIDDAQ IKMSLQRPNL
901: VSVNHDDDFV
Arabidopsis Description
CHR25Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.