Factsheet for TraesCS3D01G231800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G220700.1	Wheat	nucleus	81.57	98.11
TraesCS3A01G238800.1	Wheat	nucleus	81.42	97.82
TraesCS3B01G251000.1	Wheat	nucleus	81.26	97.27
HORVU3Hr1G054100.2	Barley	nucleus	88.35	88.21
Solyc08g077650.1.1	Tomato	cytosol	2.52	61.54
Os02t0650800-00	Rice	cytosol	44.17	59.87
Solyc08g077590.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	6.46	47.13
TraesCS2D01G053900.1	Wheat	nucleus	39.53	46.22
VIT_02s0012g00110.t01	Wine grape	cytosol	23.31	45.89
Solyc03g061640.1.1	Tomato	cytosol	5.98	45.78
PGSC0003DMT400033315	Potato	nucleus	5.2	45.52
CDY29038	Canola	nucleus	6.14	44.32
CDY59589	Canola	nucleus	6.06	43.75
CDX77430	Canola	nucleus	22.99	43.39
Solyc08g062060.1.1	Tomato	nucleus	3.54	42.45
KXG31163	Sorghum	nucleus	42.6	42.33
PGSC0003DMT400088837	Potato	cytosol	6.3	42.33
Solyc01g068300.1.1	Tomato	cytosol	12.99	42.31
Solyc04g054440.1.1	Tomato	nucleus	21.81	42.29
Solyc08g077580.1.1	Tomato	cytosol	5.75	42.2
Zm00001d051324_P001	Maize	nucleus	43.86	41.66
Solyc01g068320.1.1	Tomato	cytosol	21.57	41.02
Solyc08g077610.1.1	Tomato	nucleus	21.34	40.51
Solyc08g061370.1.1	Tomato	cytosol	5.51	40.23
Solyc08g062000.1.1	Tomato	cytosol	12.36	40.15
Solyc08g061410.1.1	Tomato	cytosol	13.78	39.86
PGSC0003DMT400017302	Potato	nucleus	19.53	39.81
Solyc08g061350.1.1	Tomato	mitochondrion	2.2	39.44
Solyc02g033050.1.1	Tomato	nucleus	19.53	39.43
PGSC0003DMT400096321	Potato	nucleus	3.86	39.2
Solyc01g060460.1.1	Tomato	nucleus	22.6	37.71
Solyc08g077690.2.1	Tomato	nucleus	21.89	37.52
KRH39939	Soybean	nucleus	18.11	37.28
PGSC0003DMT400090992	Potato	mitochondrion	6.85	35.51
Solyc01g049740.1.1	Tomato	endoplasmic reticulum, extracellular	6.69	35.27
Solyc08g077600.1.1	Tomato	cytosol	10.79	34.86
Solyc08g061390.1.1	Tomato	cytosol	6.77	34.68
Solyc08g061340.1.1	Tomato	cytosol	6.06	34.53
Solyc08g061990.1.1	Tomato	mitochondrion	10.39	34.29
PGSC0003DMT400004629	Potato	nucleus	23.86	33.97
CDX93009	Canola	nucleus	25.51	33.4
PGSC0003DMT400085993	Potato	cytosol	4.41	33.33
Solyc08g077670.1.1	Tomato	cytosol	11.65	32.67
CDX94823	Canola	nucleus	24.96	32.55
Solyc08g062070.1.1	Tomato	cytosol	3.39	32.33
CDY66441	Canola	nucleus	26.14	32.14
Bra015035.1-P	Field mustard	nucleus	26.3	32.05
PGSC0003DMT400004673	Potato	nucleus	22.44	31.11
Bra001944.1-P	Field mustard	nucleus	25.98	30.96
PGSC0003DMT400004672	Potato	nucleus	23.54	30.05
PGSC0003DMT400037430	Potato	nucleus	15.35	29.02
AT3G24340.1	Thale cress	nucleus	25.83	28.98
KRH23851	Soybean	mitochondrion, nucleus	26.54	28.9
KRH46527	Soybean	nucleus	25.98	28.75
PGSC0003DMT400085944	Potato	cytosol	5.28	28.51
KRH46528	Soybean	cytosol, extracellular, nucleus	26.69	27.21
TraesCS1D01G245400.1	Wheat	nucleus	30.94	26.46
PGSC0003DMT400017313	Potato	nucleus	24.72	26.06
PGSC0003DMT400038789	Potato	nucleus	22.36	25.68
CDY47279	Canola	nucleus	26.93	25.58
CDY10115	Canola	nucleus	27.56	25.38
AT1G05490.1	Thale cress	mitochondrion, nucleus	27.4	24.68
TraesCS2D01G189900.1	Wheat	nucleus	17.56	23.42
TraesCS4D01G279200.1	Wheat	cytosol	16.93	22.61
TraesCS5D01G344400.1	Wheat	nucleus	17.01	22.55
Bra015430.1-P	Field mustard	nucleus	27.8	22.3
TraesCS2D01G143100.1	Wheat	cytosol	9.37	19.19
TraesCS2D01G087600.1	Wheat	nucleus	18.9	19.11
TraesCS6D01G107800.1	Wheat	endoplasmic reticulum	4.57	17.74
TraesCS1D01G263000.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion, nucleus	8.98	16.99
TraesCS2D01G568400.1	Wheat	cytosol	10.63	14.14
TraesCS3D01G082200.2	Wheat	nucleus	12.91	13.43
TraesCS2D01G202400.1	Wheat	plastid	9.13	13.38
TraesCS7D01G144700.1	Wheat	cytosol	6.93	13.17
TraesCS1D01G143000.1	Wheat	nucleus	14.41	12.26
TraesCS6D01G300900.1	Wheat	cytosol	10.16	12.18
TraesCS1D01G450200.1	Wheat	mitochondrion	11.26	6.91

Protein Annotations

MapMan:16.10.1.2	Gene3D:3.40.50.10810	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR038718	InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PANTHER:PTHR10799	PANTHER:PTHR10799:SF858	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N
SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3D01G231800	EnsemblPlants:TraesCS3D01G231800.1	TIGR:cd00046	TIGR:cd00079	SEG:seg

Description

No Description!

Coordinates

chr3D:-:317554623..317558782

Molecular Weight (calculated)

141222.0 Da

IEP (calculated)

4.577

GRAVY (calculated)

-0.722

Length

1270 amino acids

Sequence
(BLAST)

0001: MPTTPSPGDL PGRRPRRLII DDVDDDDGHR APEVAAAGSQ RVEAESAQDL VPNPLAPLSS SQPAAAPATG AKPAEIIEID DDDRVPEVAT VGSQRVEAES
0101: AGDLLRNPLA PSSSSQRADA LGTGVQPAEI IEISDDDGEE EDVGETGGPV KKEPVDDIDW PSLLLSSEEE KEAPRSDEST SSGGPDGTSN GIETSRREGA
0201: SDDGEEEREE EVGMPDPEDK DGAEDGHEEE DKEEEEEDKE EDEWEQEEEE ESEESEEDSE EPEAEEEPGR RVLSDARLAG RYTGPWPGGE IFPKRKFEGW
0301: YITKMADTGS PGGTVASRLR SKRRCPDAKL LRQATRRKPY CVDTPSQSSS DAEEDEKDKP PPHPARSSSD EGGRGHGRTG IRRPRRRGQN ADDDSDEDGR
0401: TATRRRRGQN AAHSDEDFEE PGGMAAARRR EKQRMEEDDD AADGGDEADE QGASWRAKKE GAASCRQAAG RKCKDFPAEG WEQQGDVTFK KSSLVPPRRQ
0501: DGRDQETYDD LLYSIFEGIE TTLQNASLPL DAPVPAPEQG GDPFPLVFSF GVVDEVVPEK TALDDLWAQR DLALDLEAES NKVSSHTCHK DEESDEHEIP
0601: AHGGTFCKRG KHDLFHDDQI GIRCRKCDYI EIEIRHVFPS MAKESTDREP AAEHDRLDMF VDDILKSVGY EGASNVGLAS DKTGVVWDLI PGVREDMFPH
0701: QREGFEFMWR KLAGGIDIEQ LRHTMNTDTT SGCVISHAPG TGKTRLAITF VQSYLELFPH CRPVIIAPRG MLATWEQEFS KWNVKLPFHV LSSSEIQWNQ
0801: DKTIHKLVSK DHGLGQKLAM KKLSQKSKMM LKLASWYEGS SIIGLSYSLY RNLAKGEGKD GEMQRNLLLE KPGLLVLDEG HTPRNKKSLI WKVLAEVSTE
0901: KRIILSGTPF QNNFLELYNI LCLVKPKFAK DFACTRLSKK GVASTSQSRA APQVEEDEGK EFWSSLRISN ITDEHITEIR EKLGPFVHIH NGDILQKSLP
1001: GLRESVVILN PLPRQKEIIA MMEESAGKGF LDAEYKISLA SIHPFLVTST KLSDTEASVV DKMKSVRLNP CEGVKTWFVF EIIRLCEALK ERVLVFSQYL
1101: EPLALIMDQL TTELDWTEGK EILLMSGNVR VKQREALMEA FNDMNSEAKV MLASTKACCE GITLVGASRV VLLDVVWNPS VGRQAIGRAY RIGQEKIVYT
1201: YNLIAEGTKE KVKYDRQATK DHMSKLLFSN EPQPTGSNLS PELISNDRIL EKMAAREELK DMFVQILPSH

Best Arabidopsis Sequence Match ( AT1G05490.1 )
(BLAST)

0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP

Arabidopsis Description

CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.