Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77430 | Canola | nucleus | 64.59 | 100.0 |
| Bra001944.1-P | Field mustard | nucleus | 77.16 | 75.42 |
| AT3G24340.1 | Thale cress | nucleus | 63.63 | 58.57 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 31.48 | 50.85 |
| HORVU6Hr1G061730.1 | Barley | cytosol, nucleus | 15.93 | 47.03 |
| Os05t0392400-01 | Rice | cytosol, nucleus | 19.29 | 44.67 |
| KRH39939 | Soybean | nucleus | 26.39 | 44.57 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 30.61 | 33.83 |
| Os02t0650800-00 | Rice | cytosol | 29.94 | 33.3 |
| KRH23851 | Soybean | mitochondrion, nucleus | 36.66 | 32.76 |
| KRH46527 | Soybean | nucleus | 35.51 | 32.23 |
| KRH46528 | Soybean | cytosol, extracellular, nucleus | 36.66 | 30.66 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 31.0 | 30.59 |
| TraesCS3B01G251000.1 | Wheat | nucleus | 31.0 | 30.44 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 30.81 | 30.37 |
| Bra015430.1-P | Field mustard | nucleus | 42.8 | 28.17 |
| HORVU6Hr1G061720.1 | Barley | cytosol | 9.21 | 27.04 |
| TraesCS2D01G053900.1 | Wheat | nucleus | 27.74 | 26.61 |
| HORVU3Hr1G054100.2 | Barley | nucleus | 32.34 | 26.49 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 28.89 | 26.43 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 32.05 | 26.3 |
| Bra021841.1-P | Field mustard | cytosol | 18.71 | 25.52 |
| KXG31163 | Sorghum | nucleus | 31.0 | 25.27 |
| Zm00001d051324_P001 | Maize | nucleus | 31.67 | 24.68 |
| TraesCS1D01G245400.1 | Wheat | nucleus | 34.84 | 24.44 |
| HORVU1Hr1G062970.3 | Barley | mitochondrion | 34.74 | 24.43 |
| TraesCS1B01G256700.1 | Wheat | mitochondrion, nucleus | 34.93 | 24.38 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 34.84 | 24.38 |
| Zm00001d038113_P001 | Maize | mitochondrion, nucleus | 33.21 | 24.11 |
| OQU77943 | Sorghum | mitochondrion | 33.3 | 23.8 |
| Bra002302.1-P | Field mustard | cytosol | 23.32 | 19.5 |
| Bra000888.1-P | Field mustard | cytosol | 8.54 | 19.39 |
| Bra021058.1-P | Field mustard | nucleus | 23.61 | 19.35 |
| Bra022395.1-P | Field mustard | nucleus | 12.38 | 14.13 |
| Bra024192.1-P | Field mustard | nucleus | 13.24 | 11.89 |
| Bra024250.1-P | Field mustard | cytosol | 12.86 | 11.62 |
| Bra032544.1-P | Field mustard | nucleus | 11.61 | 7.36 |
| Bra007061.1-P | Field mustard | mitochondrion | 13.05 | 6.64 |
| Bra018612.1-P | Field mustard | nucleus | 14.68 | 5.91 |
| HORVU3Hr1G014620.1 | Barley | nucleus | 0.29 | 2.78 |
| Bra031634.1-P | Field mustard | nucleus | 1.06 | 1.89 |
| Os02t0762600-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.10.1.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EnsemblPlantsGene:Bra015035 | EnsemblPlants:Bra015035.1 | EnsemblPlants:Bra015035.1-P |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M4DEW3 | InterPro:P-loop_NTPase | PFAM:PF00176 |
| PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF858 | SMART:SM00487 |
| SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI0002540CF6 | SEG:seg |
Description
AT3G24340 (E=3e-279) chr40 | chr40 (chromatin remodeling 40); ATP binding / DNA binding / helicase/ nucleic acid binding
Coordinates
chrA07:+:4081844..4085147
Molecular Weight (calculated)
119011.0 Da
IEP (calculated)
5.488
GRAVY (calculated)
-0.752
Length
1042 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDMTTCVGRR TRSRTESYLN SLLNKSKGIS VENQSRSRIE RRKKRDSVRD SVSPAKPKPK RRREKKRTDD EDVEFVETIY PKGKQDDDNV GSSPVIAPSL
0101: ESKSTVNDVN SIDEEKTPDD DDCSVDCEMD DADLRGEEKV SEADEVVSLS SSSEEEEEGS VKDLETEVCG EDDYSDEEDV ESDSSDYMEE SSDSTYTGSS
0201: DSGFDCSDDD DEVGGDARNT AKVKNKSPSE RVYKREKRKN YYKKNDLDVF NLLAKSVWDR TKIFDEDICS GDDEEDTADV DTREDPIVRD SSGEYPVVRE
0301: RKRRRYHREK KKKHLNVTDQ LGNSFCESFD VGGKPWVPTH VNLRFGCEEE PEPIEKTEEE KEIDRLWEDM ALALSLEGVR SSAHSRSGDV SCSNGKHDFV
0401: LDEEVGLKCR YCSYVSVEIR DVSPTMDKYR ANINDKKTCS DKKSGGLLDS LDFAASDHSR DMESLKNTQG TVWEYIPGIK NSLYPHQQEG FEFMWNNLAG
0501: TTKLDELKSS VGKESGGCII SHSPGTGKTR LTIVFLQSYL EQFPESHPVV IAPASLMLTW EEEFKKWNSN IPFYNMSSQD FSGQENQAAV SLLKGNRHLR
0601: RNKDSVRMVK LYSWRNKKSI LGISYNLYEK LAGNRCAGEV QEFRKMLLEL PGLLVLDEGH TPRNHNSCIW KVLTEVKTEK RIILSGTPFQ NNFKELSNVL
0701: CLTRPAYADK ISSRLQDLTR LSQEGKNGRF DEEVGISELK DMIAPFVHVH KGNILRESLP GLRDCVVMLN PPFQQEKILK RIDHSQNTFE LEHKLSAVSV
0801: HPSLYMCCKQ TNKERLTIGP VALKVLESLR LDSKEGAKTR FLIDFIRFSQ TVNEKVLVFS QYIDTLELIR DQLNAVFGWT EGEEILYMHG QLKQTIRQHL
0901: INNFNRPDSK SKVLLASTGA CSEGIHLVGA SRVVLLDVVW NPSVERQAIS RAYRIGQKRV VYTYHLMVKG TTEWGKYCKQ TKKHRISEMV FSPTNEKDKL
1001: IENEVVSEDK ILDEMVRHEK LKDMFGKVLY RKKESDMFTD IL
0101: ESKSTVNDVN SIDEEKTPDD DDCSVDCEMD DADLRGEEKV SEADEVVSLS SSSEEEEEGS VKDLETEVCG EDDYSDEEDV ESDSSDYMEE SSDSTYTGSS
0201: DSGFDCSDDD DEVGGDARNT AKVKNKSPSE RVYKREKRKN YYKKNDLDVF NLLAKSVWDR TKIFDEDICS GDDEEDTADV DTREDPIVRD SSGEYPVVRE
0301: RKRRRYHREK KKKHLNVTDQ LGNSFCESFD VGGKPWVPTH VNLRFGCEEE PEPIEKTEEE KEIDRLWEDM ALALSLEGVR SSAHSRSGDV SCSNGKHDFV
0401: LDEEVGLKCR YCSYVSVEIR DVSPTMDKYR ANINDKKTCS DKKSGGLLDS LDFAASDHSR DMESLKNTQG TVWEYIPGIK NSLYPHQQEG FEFMWNNLAG
0501: TTKLDELKSS VGKESGGCII SHSPGTGKTR LTIVFLQSYL EQFPESHPVV IAPASLMLTW EEEFKKWNSN IPFYNMSSQD FSGQENQAAV SLLKGNRHLR
0601: RNKDSVRMVK LYSWRNKKSI LGISYNLYEK LAGNRCAGEV QEFRKMLLEL PGLLVLDEGH TPRNHNSCIW KVLTEVKTEK RIILSGTPFQ NNFKELSNVL
0701: CLTRPAYADK ISSRLQDLTR LSQEGKNGRF DEEVGISELK DMIAPFVHVH KGNILRESLP GLRDCVVMLN PPFQQEKILK RIDHSQNTFE LEHKLSAVSV
0801: HPSLYMCCKQ TNKERLTIGP VALKVLESLR LDSKEGAKTR FLIDFIRFSQ TVNEKVLVFS QYIDTLELIR DQLNAVFGWT EGEEILYMHG QLKQTIRQHL
0901: INNFNRPDSK SKVLLASTGA CSEGIHLVGA SRVVLLDVVW NPSVERQAIS RAYRIGQKRV VYTYHLMVKG TTEWGKYCKQ TKKHRISEMV FSPTNEKDKL
1001: IENEVVSEDK ILDEMVRHEK LKDMFGKVLY RKKESDMFTD IL
0001: MDMTSCVARR TRSRTESYLN SILNKSKGIS GEEEDQSLGC VNSRTEKRRV NMRDACSPSP RKKKRRRRKD DDDDVVFVRT EYPEGKRDDE NVGSTSGNLQ
0101: SKSFDFGDRV CDFDADDRNL GCEEKASNFN PIDDDDDVVF VGTVQRENDH VEDDDNVGSA SVISPRVCDF DEDDAKVSGK ENPLSPDDDD DVVFLGTIAG
0201: ENQHVEDVNA GSEVCDILLD DANLRGEEKT YVSDEVVSLS SSSDDEEDPL EELGTDSREE VSGEDRDSGE SDMDEDANDS DSSDYVGESS DSSDVESSDS
0301: DFVCSEDEEG GTRDDATCEK NPSEKVYHHK KSRTFRRKHN FDVINLLAKS MLESKDVFKE DIFSWDKIAE VDSREDPVVR ESSSEKVNEH GKPRERRSFH
0401: RVREKNHLNG ESFYGGEKLC DGEETINYST EDSPPLNLRF GCEEPVLIEK TEEEKELDSL WEDMNVALTL EGMHSSTPDK NGDMLCSKGT HDFVLDDEIG
0501: LKCVHCAYVA VEIKDISPAM DKYRPSVNDN KKCSDRKGDP LPNRLEFDAS DPSSFVAPLD NIEGTVWQYV PGIKDTLYPH QQEGFEFIWK NLAGTTKINE
0601: LNSVGVKGSG GCIISHKAGT GKTRLTVVFL QSYLKRFPNS HPMVIAPATL MRTWEDEVRK WNVNIPFYNM NSLQLSGYED AEAVSRLEGN RHHNSIRMVK
0701: LVSWWKQKSI LGISYPLYEK LAANKNTEGM QVFRRMLVEL PGLLVLDEGH TPRNQSSLIW KVLTEVRTEK RIFLSGTLFQ NNFKELSNVL CLARPADKDT
0801: ISSRIHELSK CSQEGEHGRV NEENRIVDLK AMIAHFVHVH EGTILQESLP GLRDCVVVLN PPFQQKKILD RIDTSQNTFE FEHKLSAVSV HPSLYLCCNP
0901: TKKEDLVIGP ATLGTLKRLR LKYEEGVKTK FLIDFIRISG TVKEKVLVYS QYIDTLKLIM EQLIAECDWT EGEQILLMHG KVEQRDRQHM IDNFNKPDSG
1001: SKVLLASTKA CSEGISLVGA SRVVILDVVW NPSVESQAIS RAFRIGQKRA VFIYHLMVKD TSEWNKYCKQ SEKHRISELV FSSTNEKDKP INNEVVSKDR
1101: ILDEMVRHEK LKHIFEKILY HPKKSDMNTS FF
0101: SKSFDFGDRV CDFDADDRNL GCEEKASNFN PIDDDDDVVF VGTVQRENDH VEDDDNVGSA SVISPRVCDF DEDDAKVSGK ENPLSPDDDD DVVFLGTIAG
0201: ENQHVEDVNA GSEVCDILLD DANLRGEEKT YVSDEVVSLS SSSDDEEDPL EELGTDSREE VSGEDRDSGE SDMDEDANDS DSSDYVGESS DSSDVESSDS
0301: DFVCSEDEEG GTRDDATCEK NPSEKVYHHK KSRTFRRKHN FDVINLLAKS MLESKDVFKE DIFSWDKIAE VDSREDPVVR ESSSEKVNEH GKPRERRSFH
0401: RVREKNHLNG ESFYGGEKLC DGEETINYST EDSPPLNLRF GCEEPVLIEK TEEEKELDSL WEDMNVALTL EGMHSSTPDK NGDMLCSKGT HDFVLDDEIG
0501: LKCVHCAYVA VEIKDISPAM DKYRPSVNDN KKCSDRKGDP LPNRLEFDAS DPSSFVAPLD NIEGTVWQYV PGIKDTLYPH QQEGFEFIWK NLAGTTKINE
0601: LNSVGVKGSG GCIISHKAGT GKTRLTVVFL QSYLKRFPNS HPMVIAPATL MRTWEDEVRK WNVNIPFYNM NSLQLSGYED AEAVSRLEGN RHHNSIRMVK
0701: LVSWWKQKSI LGISYPLYEK LAANKNTEGM QVFRRMLVEL PGLLVLDEGH TPRNQSSLIW KVLTEVRTEK RIFLSGTLFQ NNFKELSNVL CLARPADKDT
0801: ISSRIHELSK CSQEGEHGRV NEENRIVDLK AMIAHFVHVH EGTILQESLP GLRDCVVVLN PPFQQKKILD RIDTSQNTFE FEHKLSAVSV HPSLYLCCNP
0901: TKKEDLVIGP ATLGTLKRLR LKYEEGVKTK FLIDFIRISG TVKEKVLVYS QYIDTLKLIM EQLIAECDWT EGEQILLMHG KVEQRDRQHM IDNFNKPDSG
1001: SKVLLASTKA CSEGISLVGA SRVVILDVVW NPSVESQAIS RAFRIGQKRA VFIYHLMVKD TSEWNKYCKQ SEKHRISELV FSSTNEKDKP INNEVVSKDR
1101: ILDEMVRHEK LKHIFEKILY HPKKSDMNTS FF
Arabidopsis Description
CLSY4SNF2 domain-containing protein CLASSY 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.