Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93009 | Canola | nucleus | 90.53 | 99.48 |
| Bra015035.1-P | Field mustard | nucleus | 75.42 | 77.16 |
| AT3G24340.1 | Thale cress | nucleus | 62.95 | 59.28 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 30.3 | 50.08 |
| HORVU6Hr1G061730.1 | Barley | cytosol, nucleus | 15.48 | 46.74 |
| Os05t0392400-01 | Rice | cytosol, nucleus | 18.95 | 44.89 |
| KRH39939 | Soybean | nucleus | 25.8 | 44.57 |
| GSMUA_Achr7P06840_001 | Banana | nucleus | 29.64 | 33.51 |
| Os02t0650800-00 | Rice | cytosol | 29.17 | 33.19 |
| KRH23851 | Soybean | mitochondrion, nucleus | 34.9 | 31.9 |
| KRH46527 | Soybean | nucleus | 33.77 | 31.36 |
| KRH46528 | Soybean | cytosol, extracellular, nucleus | 36.12 | 30.9 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 29.93 | 30.21 |
| TraesCS3B01G251000.1 | Wheat | nucleus | 29.93 | 30.07 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 29.74 | 29.99 |
| Bra015430.1-P | Field mustard | nucleus | 41.56 | 27.98 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 29.17 | 27.3 |
| TraesCS2D01G053900.1 | Wheat | nucleus | 27.77 | 27.26 |
| HORVU6Hr1G061720.1 | Barley | cytosol | 8.82 | 26.48 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 30.96 | 25.98 |
| HORVU3Hr1G054100.2 | Barley | nucleus | 30.96 | 25.94 |
| KXG31163 | Sorghum | nucleus | 30.3 | 25.27 |
| Bra021841.1-P | Field mustard | cytosol | 18.11 | 25.26 |
| Zm00001d051324_P001 | Maize | nucleus | 30.39 | 24.23 |
| Zm00001d038113_P001 | Maize | mitochondrion, nucleus | 32.55 | 24.18 |
| TraesCS1D01G245400.1 | Wheat | nucleus | 33.4 | 23.97 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 33.4 | 23.91 |
| HORVU1Hr1G062970.3 | Barley | mitochondrion | 33.11 | 23.82 |
| TraesCS1B01G256700.1 | Wheat | mitochondrion, nucleus | 33.3 | 23.78 |
| OQU77943 | Sorghum | mitochondrion | 32.27 | 23.59 |
| Bra000888.1-P | Field mustard | cytosol | 8.35 | 19.39 |
| Bra002302.1-P | Field mustard | cytosol | 22.33 | 19.1 |
| Bra021058.1-P | Field mustard | nucleus | 22.7 | 19.04 |
| Bra022395.1-P | Field mustard | nucleus | 12.57 | 14.68 |
| Bra024192.1-P | Field mustard | nucleus | 13.04 | 11.97 |
| Bra024250.1-P | Field mustard | cytosol | 12.85 | 11.88 |
| Bra032544.1-P | Field mustard | nucleus | 11.35 | 7.36 |
| Bra007061.1-P | Field mustard | mitochondrion | 12.29 | 6.4 |
| Bra018612.1-P | Field mustard | nucleus | 14.73 | 6.06 |
| Bra031634.1-P | Field mustard | nucleus | 1.5 | 2.75 |
| HORVU3Hr1G014620.1 | Barley | nucleus | 0.19 | 1.85 |
| Os02t0762600-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:16.10.1.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | EnsemblPlantsGene:Bra001944 | EnsemblPlants:Bra001944.1 | EnsemblPlants:Bra001944.1-P |
| ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR038718 | UniProt:M4CCL4 | InterPro:P-loop_NTPase |
| PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF858 |
| SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N | SUPFAM:SSF52540 | UniParc:UPI00025407C1 |
| SEG:seg | : | : | : | : | : |
Description
AT3G24340 (E=1e-302) chr40 | chr40 (chromatin remodeling 40); ATP binding / DNA binding / helicase/ nucleic acid binding
Coordinates
chrA03:-:19504788..19508164
Molecular Weight (calculated)
121843.0 Da
IEP (calculated)
5.808
GRAVY (calculated)
-0.678
Length
1066 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDMTTCVGRR TRSRTESYLN DLLNQSKGIS VAVQSNSRPA PLRDSSSPEK PKRRRKRKSK DDDEVEFVGT IYPKGKREKE IVVVEDDNVG SPPMIALSSE
0101: SDRACGVSVD DAMGDDDGDV EFVRTIYPKE DDRAVDDENL IGEESPDDDD VVYLGTLLRD QEHVDRVSDL DVDDANLMGE EKILEPDDEV MSLSSGSDDE
0201: ASIEDLGTEV SDYTEKSSDS SYAESSDSGF DCSEDDEFRG ARDTATVKKK SPSKRVYTRE KRKTSYRKND LDVSDLLAKS IWQRKKIVEE DIFSEDETAE
0301: VDTREDPIVR ERSSEKVHEQ RKRRRFHREK KKNHLSVVDL LGDSFENFDV GENLWVSPPI NLRFGCEEPE PVEKTEEEKE IDRLWQDMAL ALSLEGLHSS
0401: TYFKNGDVSC SNGKHDFVLD EEIGLKCRCC SYVSVEMKDV SPAMDKYRAN VKYRDTVNYK NTCRTKGDPL LDSLDLEASE HNSNVASLKD TQGTVWEYIP
0501: GIKNTLYPHQ REGFEFMWKN LAGTTKLDEL KSSVVKESGG CIISHAPGTG KTRLTIVFLQ SYLQQFPDSH PVVIAPASLL LTWEEEFKKW NSNIPFYNMS
0601: NQELSGLENP SAVSLLKGNR QHRSKTDSVR MVKLYSWRNK KSILGISYSL YEKLTGNKCA SGETQKFRKM LLDFPGLLVL DEGHTPRNQN SCIWKVLTEV
0701: KTEKRIILSG TPFQNNFKEL SNVLCLTRPA YKDKISSRLH DLTRLSQEGK NGRFDEEIGI AELKDMIAPF VHVHKGNILR ESLPGLRDCV VVLNAPFQQA
0801: KILTRIDHSQ KTFDLEHKLS AVSVHPSLYL RRKQTDKERL TIGPVVLKSL ESLTLESKEG AKTRFLIDFI RFSETVKEKV LVFSQHIDTL ELIRDQLSAV
0901: FGWTEGEEIL YMHGQLQQKF RQRLINNFNK SDSKSKVLLA STKACSEGIN LVGASRVVLL DVDWNPSVER QAISRAYRIG QKRVVYTYHL MVKGTTEWDK
1001: YCKQNKKHRI SEMVFSPTNE KDKLIENEVV SEDKILDEMV RHEKLKDMFE KILYRKKESD MFTNIL
0101: SDRACGVSVD DAMGDDDGDV EFVRTIYPKE DDRAVDDENL IGEESPDDDD VVYLGTLLRD QEHVDRVSDL DVDDANLMGE EKILEPDDEV MSLSSGSDDE
0201: ASIEDLGTEV SDYTEKSSDS SYAESSDSGF DCSEDDEFRG ARDTATVKKK SPSKRVYTRE KRKTSYRKND LDVSDLLAKS IWQRKKIVEE DIFSEDETAE
0301: VDTREDPIVR ERSSEKVHEQ RKRRRFHREK KKNHLSVVDL LGDSFENFDV GENLWVSPPI NLRFGCEEPE PVEKTEEEKE IDRLWQDMAL ALSLEGLHSS
0401: TYFKNGDVSC SNGKHDFVLD EEIGLKCRCC SYVSVEMKDV SPAMDKYRAN VKYRDTVNYK NTCRTKGDPL LDSLDLEASE HNSNVASLKD TQGTVWEYIP
0501: GIKNTLYPHQ REGFEFMWKN LAGTTKLDEL KSSVVKESGG CIISHAPGTG KTRLTIVFLQ SYLQQFPDSH PVVIAPASLL LTWEEEFKKW NSNIPFYNMS
0601: NQELSGLENP SAVSLLKGNR QHRSKTDSVR MVKLYSWRNK KSILGISYSL YEKLTGNKCA SGETQKFRKM LLDFPGLLVL DEGHTPRNQN SCIWKVLTEV
0701: KTEKRIILSG TPFQNNFKEL SNVLCLTRPA YKDKISSRLH DLTRLSQEGK NGRFDEEIGI AELKDMIAPF VHVHKGNILR ESLPGLRDCV VVLNAPFQQA
0801: KILTRIDHSQ KTFDLEHKLS AVSVHPSLYL RRKQTDKERL TIGPVVLKSL ESLTLESKEG AKTRFLIDFI RFSETVKEKV LVFSQHIDTL ELIRDQLSAV
0901: FGWTEGEEIL YMHGQLQQKF RQRLINNFNK SDSKSKVLLA STKACSEGIN LVGASRVVLL DVDWNPSVER QAISRAYRIG QKRVVYTYHL MVKGTTEWDK
1001: YCKQNKKHRI SEMVFSPTNE KDKLIENEVV SEDKILDEMV RHEKLKDMFE KILYRKKESD MFTNIL
0001: MDMTSCVARR TRSRTESYLN SILNKSKGIS GEEEDQSLGC VNSRTEKRRV NMRDACSPSP RKKKRRRRKD DDDDVVFVRT EYPEGKRDDE NVGSTSGNLQ
0101: SKSFDFGDRV CDFDADDRNL GCEEKASNFN PIDDDDDVVF VGTVQRENDH VEDDDNVGSA SVISPRVCDF DEDDAKVSGK ENPLSPDDDD DVVFLGTIAG
0201: ENQHVEDVNA GSEVCDILLD DANLRGEEKT YVSDEVVSLS SSSDDEEDPL EELGTDSREE VSGEDRDSGE SDMDEDANDS DSSDYVGESS DSSDVESSDS
0301: DFVCSEDEEG GTRDDATCEK NPSEKVYHHK KSRTFRRKHN FDVINLLAKS MLESKDVFKE DIFSWDKIAE VDSREDPVVR ESSSEKVNEH GKPRERRSFH
0401: RVREKNHLNG ESFYGGEKLC DGEETINYST EDSPPLNLRF GCEEPVLIEK TEEEKELDSL WEDMNVALTL EGMHSSTPDK NGDMLCSKGT HDFVLDDEIG
0501: LKCVHCAYVA VEIKDISPAM DKYRPSVNDN KKCSDRKGDP LPNRLEFDAS DPSSFVAPLD NIEGTVWQYV PGIKDTLYPH QQEGFEFIWK NLAGTTKINE
0601: LNSVGVKGSG GCIISHKAGT GKTRLTVVFL QSYLKRFPNS HPMVIAPATL MRTWEDEVRK WNVNIPFYNM NSLQLSGYED AEAVSRLEGN RHHNSIRMVK
0701: LVSWWKQKSI LGISYPLYEK LAANKNTEGM QVFRRMLVEL PGLLVLDEGH TPRNQSSLIW KVLTEVRTEK RIFLSGTLFQ NNFKELSNVL CLARPADKDT
0801: ISSRIHELSK CSQEGEHGRV NEENRIVDLK AMIAHFVHVH EGTILQESLP GLRDCVVVLN PPFQQKKILD RIDTSQNTFE FEHKLSAVSV HPSLYLCCNP
0901: TKKEDLVIGP ATLGTLKRLR LKYEEGVKTK FLIDFIRISG TVKEKVLVYS QYIDTLKLIM EQLIAECDWT EGEQILLMHG KVEQRDRQHM IDNFNKPDSG
1001: SKVLLASTKA CSEGISLVGA SRVVILDVVW NPSVESQAIS RAFRIGQKRA VFIYHLMVKD TSEWNKYCKQ SEKHRISELV FSSTNEKDKP INNEVVSKDR
1101: ILDEMVRHEK LKHIFEKILY HPKKSDMNTS FF
0101: SKSFDFGDRV CDFDADDRNL GCEEKASNFN PIDDDDDVVF VGTVQRENDH VEDDDNVGSA SVISPRVCDF DEDDAKVSGK ENPLSPDDDD DVVFLGTIAG
0201: ENQHVEDVNA GSEVCDILLD DANLRGEEKT YVSDEVVSLS SSSDDEEDPL EELGTDSREE VSGEDRDSGE SDMDEDANDS DSSDYVGESS DSSDVESSDS
0301: DFVCSEDEEG GTRDDATCEK NPSEKVYHHK KSRTFRRKHN FDVINLLAKS MLESKDVFKE DIFSWDKIAE VDSREDPVVR ESSSEKVNEH GKPRERRSFH
0401: RVREKNHLNG ESFYGGEKLC DGEETINYST EDSPPLNLRF GCEEPVLIEK TEEEKELDSL WEDMNVALTL EGMHSSTPDK NGDMLCSKGT HDFVLDDEIG
0501: LKCVHCAYVA VEIKDISPAM DKYRPSVNDN KKCSDRKGDP LPNRLEFDAS DPSSFVAPLD NIEGTVWQYV PGIKDTLYPH QQEGFEFIWK NLAGTTKINE
0601: LNSVGVKGSG GCIISHKAGT GKTRLTVVFL QSYLKRFPNS HPMVIAPATL MRTWEDEVRK WNVNIPFYNM NSLQLSGYED AEAVSRLEGN RHHNSIRMVK
0701: LVSWWKQKSI LGISYPLYEK LAANKNTEGM QVFRRMLVEL PGLLVLDEGH TPRNQSSLIW KVLTEVRTEK RIFLSGTLFQ NNFKELSNVL CLARPADKDT
0801: ISSRIHELSK CSQEGEHGRV NEENRIVDLK AMIAHFVHVH EGTILQESLP GLRDCVVVLN PPFQQKKILD RIDTSQNTFE FEHKLSAVSV HPSLYLCCNP
0901: TKKEDLVIGP ATLGTLKRLR LKYEEGVKTK FLIDFIRISG TVKEKVLVYS QYIDTLKLIM EQLIAECDWT EGEQILLMHG KVEQRDRQHM IDNFNKPDSG
1001: SKVLLASTKA CSEGISLVGA SRVVILDVVW NPSVESQAIS RAFRIGQKRA VFIYHLMVKD TSEWNKYCKQ SEKHRISELV FSSTNEKDKP INNEVVSKDR
1101: ILDEMVRHEK LKHIFEKILY HPKKSDMNTS FF
Arabidopsis Description
CLSY4SNF2 domain-containing protein CLASSY 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK10]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.