Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G238800.1 | Wheat | nucleus | 99.15 | 99.05 |
| TraesCS3B01G251000.1 | Wheat | nucleus | 98.39 | 97.93 |
| TraesCS3D01G231800.1 | Wheat | nucleus | 98.11 | 81.57 |
| HORVU3Hr1G054100.2 | Barley | nucleus | 90.62 | 75.24 |
| Solyc08g077650.1.1 | Tomato | cytosol | 3.03 | 61.54 |
| Os02t0650800-00 | Rice | cytosol | 53.03 | 59.77 |
| Solyc08g077590.1.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 7.77 | 47.13 |
| Solyc03g061640.1.1 | Tomato | cytosol | 7.2 | 45.78 |
| VIT_02s0012g00110.t01 | Wine grape | cytosol | 27.94 | 45.74 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 49.24 | 45.65 |
| PGSC0003DMT400033315 | Potato | nucleus | 6.25 | 45.52 |
| CDY29038 | Canola | nucleus | 7.39 | 44.32 |
| CDY59589 | Canola | nucleus | 7.29 | 43.75 |
| CDX77430 | Canola | nucleus | 27.56 | 43.24 |
| Solyc08g062060.1.1 | Tomato | nucleus | 4.26 | 42.45 |
| PGSC0003DMT400088837 | Potato | cytosol | 7.58 | 42.33 |
| Solyc01g068300.1.1 | Tomato | cytosol | 15.62 | 42.31 |
| Solyc04g054440.1.1 | Tomato | nucleus | 26.23 | 42.29 |
| Solyc08g077580.1.1 | Tomato | cytosol | 6.91 | 42.2 |
| KXG31163 | Sorghum | nucleus | 49.62 | 41.0 |
| Solyc01g068320.1.1 | Tomato | cytosol | 25.85 | 40.87 |
| Solyc08g077610.1.1 | Tomato | nucleus | 25.66 | 40.51 |
| Solyc08g061370.1.1 | Tomato | cytosol | 6.63 | 40.23 |
| Solyc08g062000.1.1 | Tomato | cytosol | 14.87 | 40.15 |
| PGSC0003DMT400017302 | Potato | nucleus | 23.58 | 39.97 |
| Solyc08g061410.1.1 | Tomato | cytosol | 16.57 | 39.86 |
| Zm00001d051324_P001 | Maize | nucleus | 50.28 | 39.72 |
| Solyc08g061350.1.1 | Tomato | mitochondrion | 2.65 | 39.44 |
| Solyc02g033050.1.1 | Tomato | nucleus | 23.48 | 39.43 |
| PGSC0003DMT400096321 | Potato | nucleus | 4.64 | 39.2 |
| Solyc01g060460.1.1 | Tomato | nucleus | 26.89 | 37.32 |
| Solyc08g077690.2.1 | Tomato | nucleus | 26.14 | 37.25 |
| KRH39939 | Soybean | nucleus | 21.21 | 36.3 |
| Solyc01g049740.1.1 | Tomato | endoplasmic reticulum, extracellular | 8.05 | 35.27 |
| PGSC0003DMT400090992 | Potato | mitochondrion | 8.14 | 35.1 |
| Solyc08g061340.1.1 | Tomato | cytosol | 7.29 | 34.53 |
| Solyc08g061990.1.1 | Tomato | mitochondrion | 12.5 | 34.29 |
| Solyc08g061390.1.1 | Tomato | cytosol | 8.05 | 34.27 |
| PGSC0003DMT400085993 | Potato | cytosol | 5.3 | 33.33 |
| Solyc08g077600.1.1 | Tomato | cytosol | 12.31 | 33.08 |
| PGSC0003DMT400004629 | Potato | nucleus | 27.65 | 32.74 |
| CDX93009 | Canola | nucleus | 29.83 | 32.47 |
| Solyc08g062070.1.1 | Tomato | cytosol | 4.07 | 32.33 |
| Solyc08g077670.1.1 | Tomato | cytosol | 13.83 | 32.23 |
| CDX94823 | Canola | nucleus | 28.98 | 31.42 |
| CDY66441 | Canola | nucleus | 30.49 | 31.17 |
| Bra015035.1-P | Field mustard | nucleus | 30.59 | 31.0 |
| PGSC0003DMT400004673 | Potato | nucleus | 26.04 | 30.02 |
| Bra001944.1-P | Field mustard | nucleus | 30.21 | 29.93 |
| PGSC0003DMT400004672 | Potato | nucleus | 26.99 | 28.64 |
| PGSC0003DMT400085944 | Potato | cytosol | 6.34 | 28.51 |
| KRH23851 | Soybean | mitochondrion, nucleus | 30.78 | 27.87 |
| PGSC0003DMT400037430 | Potato | nucleus | 17.71 | 27.83 |
| KRH46527 | Soybean | nucleus | 30.11 | 27.7 |
| AT3G24340.1 | Thale cress | nucleus | 29.55 | 27.56 |
| KRH46528 | Soybean | cytosol, extracellular, nucleus | 30.59 | 25.92 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 35.61 | 25.25 |
| CDY47279 | Canola | nucleus | 31.91 | 25.21 |
| PGSC0003DMT400017313 | Potato | nucleus | 28.6 | 25.06 |
| PGSC0003DMT400038789 | Potato | nucleus | 25.85 | 24.68 |
| CDY10115 | Canola | nucleus | 31.82 | 24.37 |
| AT1G05490.1 | Thale cress | mitochondrion, nucleus | 31.91 | 23.9 |
| TraesCS2A01G140400.2 | Wheat | cytosol | 20.17 | 22.28 |
| TraesCS5A01G340400.1 | Wheat | nucleus | 20.08 | 22.13 |
| TraesCS2A01G182200.1 | Wheat | plastid | 20.83 | 21.17 |
| Bra015430.1-P | Field mustard | nucleus | 31.72 | 21.16 |
| TraesCS4A01G022800.1 | Wheat | mitochondrion, plastid | 19.89 | 21.08 |
| TraesCS2A01G089500.1 | Wheat | plastid | 22.06 | 18.48 |
| TraesCS3A01G015600.1 | Wheat | endoplasmic reticulum, golgi | 9.75 | 17.05 |
| TraesCS2A01G185300.1 | Wheat | plastid | 10.89 | 13.26 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 15.15 | 12.97 |
| TraesCS6A01G321200.1 | Wheat | nucleus | 11.74 | 12.74 |
| TraesCS2A01G561600.1 | Wheat | mitochondrion | 12.59 | 12.44 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 15.53 | 10.94 |
| TraesCS1A01G442400.2 | Wheat | mitochondrion | 12.97 | 6.62 |
Protein Annotations
| MapMan:16.10.1.2 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR10799 | PANTHER:PTHR10799:SF858 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf | InterPro:SNF2_N |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS3A01G220700 | EnsemblPlants:TraesCS3A01G220700.1 | TIGR:cd00046 | TIGR:cd00079 | SEG:seg |
Description
No Description!
Coordinates
chr3A:+:408941580..408945132
Molecular Weight (calculated)
118691.0 Da
IEP (calculated)
5.092
GRAVY (calculated)
-0.686
Length
1056 amino acids
Sequence
(BLAST)
(BLAST)
0001: MPDPEDKDGA EDAHEEEDKE EEEEDKEEDE WEQEEEEESE ESEEDSEEPE AEEEPGRRVL SDARLAGRYT GPRPGGEIFL KRKFEGWYIT KMADTASPGG
0101: TVASRLRSKR RCPDAKLLRQ ATRRKPYCVD TPSQSSSEAE EDDKDKPPPH PARSSSDEGG RGHGRTGIRR PRRRGQNADD DSDEDGRSAT RRRRGQNAAH
0201: TDEDFEEPGG MAAARREKQR MEEDDAAADG GDEADEQGAS RRAKKEGAAS CRQAAGRKGK DFPAEGWEQQ GDVTFKKSSL VPPRRQDGRD QETYDDLLYS
0301: IFEGIETTLQ NASAPLDAPV PAPEQGGDPF PLVFSFGVVD KVVPEKTALD DLWAQRDLAL DLEAESNKVS SHTCHKDAES DEHEIPAHGG TFCKRGKHDL
0401: FHDDQIGIRC RKCDYIEIEI RHVFPSMAKE STDREPAAEH DRLDMFVDDI LKSVGYEGAS NVALGSDKTG VVWDLIPGVR EDMFPHQREG FEFMWRKLAG
0501: GIDIEQLRHT MNTDTTSGCV ISHAPGTGKT RLAITFVQSY LELFPHCRPV IIAPRGMLAT WEQEFSKWNV KLPFHVLSSS EIQWDQDKTI QKLVSKDHGL
0601: GQKLAMKKLS QKSKMMLKLA SWYEGSSIIG LSYSLYRNLA KGEGKDGEMQ RNLLLEKPGL LVLDEGHTPR NKKSLIWKVL AEVSTEKRII LSGTPFQNNF
0701: LELYNILCLV KPKFAKDFAC TRLSKKGVAS TSQSRAAPYV EEDEGKEFWS SLRISNITDE HITEIREKLG PFVHIHNGDI LQKSLPGLRE SVVILNPLPR
0801: QKEIIAMMEE SAGKGFLDAE YKISLASIHP FLVTSTKLSD TEASVVDKMK SVRLNPCKGV KTWFVFEIIR LCEALKERVL VFSQYLEPLA LIMDQLTTEL
0901: DWTEGKEILL MSGNVRVKQR EALMEAFNDM NSEAKVMLAS TKACCEGITL VGASRVVLLD VVWNPSVGRQ AIGRAYRIGQ EKIVYTYNLI AEGTKEKVKY
1001: DRQATKDHMS KLLFSNEPQP TGSNLSPELI SNDRILEKMA AREELKDMFV QILPSH
0101: TVASRLRSKR RCPDAKLLRQ ATRRKPYCVD TPSQSSSEAE EDDKDKPPPH PARSSSDEGG RGHGRTGIRR PRRRGQNADD DSDEDGRSAT RRRRGQNAAH
0201: TDEDFEEPGG MAAARREKQR MEEDDAAADG GDEADEQGAS RRAKKEGAAS CRQAAGRKGK DFPAEGWEQQ GDVTFKKSSL VPPRRQDGRD QETYDDLLYS
0301: IFEGIETTLQ NASAPLDAPV PAPEQGGDPF PLVFSFGVVD KVVPEKTALD DLWAQRDLAL DLEAESNKVS SHTCHKDAES DEHEIPAHGG TFCKRGKHDL
0401: FHDDQIGIRC RKCDYIEIEI RHVFPSMAKE STDREPAAEH DRLDMFVDDI LKSVGYEGAS NVALGSDKTG VVWDLIPGVR EDMFPHQREG FEFMWRKLAG
0501: GIDIEQLRHT MNTDTTSGCV ISHAPGTGKT RLAITFVQSY LELFPHCRPV IIAPRGMLAT WEQEFSKWNV KLPFHVLSSS EIQWDQDKTI QKLVSKDHGL
0601: GQKLAMKKLS QKSKMMLKLA SWYEGSSIIG LSYSLYRNLA KGEGKDGEMQ RNLLLEKPGL LVLDEGHTPR NKKSLIWKVL AEVSTEKRII LSGTPFQNNF
0701: LELYNILCLV KPKFAKDFAC TRLSKKGVAS TSQSRAAPYV EEDEGKEFWS SLRISNITDE HITEIREKLG PFVHIHNGDI LQKSLPGLRE SVVILNPLPR
0801: QKEIIAMMEE SAGKGFLDAE YKISLASIHP FLVTSTKLSD TEASVVDKMK SVRLNPCKGV KTWFVFEIIR LCEALKERVL VFSQYLEPLA LIMDQLTTEL
0901: DWTEGKEILL MSGNVRVKQR EALMEAFNDM NSEAKVMLAS TKACCEGITL VGASRVVLLD VVWNPSVGRQ AIGRAYRIGQ EKIVYTYNLI AEGTKEKVKY
1001: DRQATKDHMS KLLFSNEPQP TGSNLSPELI SNDRILEKMA AREELKDMFV QILPSH
0001: MECIGKRVKS RSWQRLQAVN KRKKMETVAP VTSPPKKRRQ KKPKNYDSDI EDITPTCNDS VPPPQVSNMY SVPNNSVKES FSRIMRDLNV EKKSGPSSSR
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
0101: LTDGSEQNPC LKERSFRVSD LGVEKKCSPE ITDLDVGIPV PRFSKLKDVS EQKNTCLMQK SSPEIADLDL VISVPSSSVL KDVSEEIRFL KDKCSPEIRG
0201: LVLEKSVPGE IEILSDSESE TEARRRASAK KKLFEESSRI VESISDGEDS SSETDEEEEE NQDSEDNNTK DNVTVESLSS EDPSSSSSSS SSSSSSSSSS
0301: SSDDESYVKE VVGDNRDDDD LRKASSPIKR VSLVERKALV RYKRSGSSLT KPRERDNKIQ KLNHREEEKK ERQREVVRVV TKQPSNVVYT CAHCGKENTG
0401: NPESHSSFIR PHSIRDEIED VNNFASTNVS KYEDSVSINS GKTTGAPSRP EVENPETGKE LNTPEKPSIS RPEIFTTEKA IDVQVPEEPS RPEIYSSEKA
0501: KEVQAPEMPS RPEVFSSEKA KEIQVPEMPS IPEIQNSEKA KEVQANNRMG LTTPAVAEGL NKSVVTNEHI EDDSDSSISS GDGYESDPTL KDKEVKINNH
0601: SDWRILNGNN KEVDLFRLLV NSVWEKGQLG EEDEADELVS SAEDQSQEQA REDHRKYDDA GLLIIRPPPL IEKFGVEEPQ SPPVVSEIDS EEDRLWEELA
0701: FFTKSNDIGG NELFSNVEKN ISANETPAAQ CKKGKHDLCI DLEVGLKCMH CGFVEREIRS MDVSEWGEKT TRERRKFDRF EEEEGSSFIG KLGFDAPNNS
0801: LNEGCVSSEG TVWDKIPGVK SQMYPHQQEG FEFIWKNLAG TIMLNELKDF ENSDETGGCI MSHAPGTGKT RLTIIFLQAY LQCFPDCKPV IIAPASLLLT
0901: WAEEFKKWNI SIPFHNLSSL DFTGKENSAA LGLLMQKNAT ARSNNEIRMV KIYSWIKSKS ILGISYNLYE KLAGVKDEDK KTKMVREVKP DKELDDIREI
1001: LMGRPGLLVL DEAHTPRNQR SCIWKTLSKV ETQKRILLSG TPFQNNFLEL CNVLGLARPK YLERLTSTLK KSGMTVTKRG KKNLGNEINN RGIEELKAVM
1101: LPFVHVHKGS ILQSSLPGLR ECVVVLNPPE LQRRVLESIE VTHNRKTKNV FETEHKLSLV SVHPSLVSRC KISEKERLSI DEALLAQLKK VRLDPNQSVK
1201: TRFLMEFVEL CEVIKEKVLV FSQYIDPLKL IMKHLVSRFK WNPGEEVLYM HGKLEQKQRQ TLINEFNDPK SKAKVFLAST KACSEGISLV GASRVILLDV
1301: VWNPAVERQA ISRAYRIGQK RIVYTYHLVA KGTPEGPKYC KQAQKDRISE LVFACSSRHD KGKEKIAEAV TEDKVLDTMV EHSKLGDMFD NLIVQPKEAD
1401: LVEGFSILMP
Arabidopsis Description
CLSY3SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.