Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G344400.1 | Wheat | nucleus | 98.33 | 98.33 |
| HORVU5Hr1G085320.1 | Barley | plastid | 93.22 | 91.59 |
| Os07t0434500-01 | Rice | cytoskeleton, cytosol, nucleus | 53.13 | 75.74 |
| TraesCS2A01G182200.1 | Wheat | plastid | 74.53 | 68.72 |
| Os06t0255700-01 | Rice | cytosol | 66.28 | 67.12 |
| Os08t0243866-00 | Rice | endoplasmic reticulum | 42.9 | 63.62 |
| Zm00001d024677_P003 | Maize | cytosol | 59.08 | 59.58 |
| KXG24379 | Sorghum | cytosol | 60.02 | 59.28 |
| Zm00001d049605_P037 | Maize | cytosol | 60.02 | 58.85 |
| Os08t0289400-00 | Rice | cytosol, nucleus | 31.42 | 57.01 |
| VIT_06s0004g08480.t01 | Wine grape | mitochondrion, plastid | 38.41 | 54.04 |
| VIT_03s0038g04290.t01 | Wine grape | nucleus | 11.8 | 51.13 |
| KRH27453 | Soybean | cytosol | 43.42 | 47.11 |
| Bra021841.1-P | Field mustard | cytosol | 36.53 | 45.81 |
| AT2G16390.2 | Thale cress | nucleus | 41.96 | 45.12 |
| CDX89710 | Canola | nucleus | 39.77 | 44.1 |
| VIT_03s0038g00030.t01 | Wine grape | nucleus | 42.9 | 43.22 |
| Solyc01g109970.2.1 | Tomato | extracellular | 40.81 | 43.11 |
| KRH20806 | Soybean | cytosol | 42.28 | 42.5 |
| PGSC0003DMT400079488 | Potato | nucleus | 40.61 | 42.05 |
| TraesCS2A01G140400.2 | Wheat | cytosol | 40.4 | 40.48 |
| GSMUA_Achr6P04530_001 | Banana | nucleus | 37.37 | 40.36 |
| TraesCS4A01G022800.1 | Wheat | mitochondrion, plastid | 40.4 | 38.86 |
| Bra000888.1-P | Field mustard | cytosol | 17.01 | 35.51 |
| TraesCS3A01G220700.1 | Wheat | nucleus | 22.13 | 20.08 |
| TraesCS3A01G238800.1 | Wheat | nucleus | 21.92 | 19.87 |
| TraesCS3A01G015600.1 | Wheat | endoplasmic reticulum, golgi | 11.69 | 18.54 |
| TraesCS6A01G241100.1 | Wheat | nucleus | 21.61 | 18.17 |
| TraesCS2A01G089500.1 | Wheat | plastid | 23.17 | 17.61 |
| TraesCS1A01G245700.1 | Wheat | mitochondrion, nucleus | 22.76 | 14.64 |
| TraesCS2A01G185300.1 | Wheat | plastid | 12.94 | 14.3 |
| TraesCS6A01G321200.1 | Wheat | nucleus | 13.15 | 12.95 |
| TraesCS2A01G561600.1 | Wheat | mitochondrion | 13.36 | 11.97 |
| TraesCS1A01G144000.3 | Wheat | nucleus | 18.06 | 11.54 |
| TraesCS3A01G081900.1 | Wheat | nucleus | 12.84 | 9.97 |
| TraesCS1A01G442400.2 | Wheat | mitochondrion | 12.73 | 5.9 |
Protein Annotations
| MapMan:12.4.1.3.3 | MapMan:12.5.1.14.1 | Gene3D:3.40.50.10810 | Gene3D:3.40.50.300 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR038718 | InterPro:P-loop_NTPase | PFAM:PF00176 | PFAM:PF00271 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR10799 | PANTHER:PTHR10799:SF807 | SMART:SM00487 | SMART:SM00490 | InterPro:SNF2-like_sf |
| InterPro:SNF2_N | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS5A01G340400 | EnsemblPlants:TraesCS5A01G340400.1 | TIGR:cd00046 | TIGR:cd00079 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr5A:-:547038670..547045969
Molecular Weight (calculated)
108116.0 Da
IEP (calculated)
5.434
GRAVY (calculated)
-0.478
Length
958 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVAPGEDPP ADPSGMYYRR KRKRSDPINN LSLTGNRVHS WGCGSVTEEW DRLYAQRVQL LTFLSTLPEP ALSYGPSAGT NMANSIEQRE EKKSVIVLDS
101: DDEDESTGAH EQLKPEKNKQ LTPEKNKQLI PSEQAGALMR VVTEGIDEVI NETMPVRDQN SQIVPYSPSA TLVNQYPVTS YQPSAVLFER VILQKRPEEE
201: RIHDLAVATH KEKIAETQVL PPLPKERKKR KVDPSSQVDG DVEIVPRKRK TKNEANPAVF DLPSEPYNPV GEDEPVEEDE PMGEDEPMEE EHIQEQESDG
301: LEEFWNEYSV ALESSKLDTL EEAANEKEVD EKEVDNACNH DIQIHEDLGH VCRVCGLIVK RADTIIDYQW RKASRSRSYF SEKRSKDSDE IVTGDVRVAE
401: ELNALDIAIH PRHEKQMRPH QLAGFHFLVK NLVSDKPGGC ILAHAPGSGK TFMLISFIQS FLAKYPSGRP LVVLPKGILG TWKREFQQWQ VEDIPLYDLY
501: SVKTRAEQLE ILKSWEAKRS ILLVGYTQFS WIISSDEGGA VAAGCQERLL KVPNLLIMDE GHLPRTESTN VLESLQRVQT PRKVVLSGTL FQNHVSEVFN
601: IVNLVRPKFL KKDSSRPIVA RIMSQVSISG RRISKEDTDK FNESVEETLL HDGDFTRKVN VIRSLRELTK DVLHYYKGDI LDDLPGLVDF SVFLKLSPKQ
701: KEIVHKLEAY EKFKKNAVGT ALYMHPCLSE MSEVAAADRA SNLTDAAVDS LVQSINVADG VKARFFTNIL ALAESAGEKV LAFSQYLLPM KFLERLLVKT
801: RGWHVGKEMF VIRGDSKCTM EERELTVAQF NNSADAKVLF GSIKACGEGI SLVGASRVVI LDVHLNPSVT RQAIGRAFRP GQQKKVFVYR LVAADSPEEN
901: THKTAVKKEV IPKLWFEWSE QRCTSEGFQL NEIDIDDCGD ELLDNRAMRQ DIKALYAR
101: DDEDESTGAH EQLKPEKNKQ LTPEKNKQLI PSEQAGALMR VVTEGIDEVI NETMPVRDQN SQIVPYSPSA TLVNQYPVTS YQPSAVLFER VILQKRPEEE
201: RIHDLAVATH KEKIAETQVL PPLPKERKKR KVDPSSQVDG DVEIVPRKRK TKNEANPAVF DLPSEPYNPV GEDEPVEEDE PMGEDEPMEE EHIQEQESDG
301: LEEFWNEYSV ALESSKLDTL EEAANEKEVD EKEVDNACNH DIQIHEDLGH VCRVCGLIVK RADTIIDYQW RKASRSRSYF SEKRSKDSDE IVTGDVRVAE
401: ELNALDIAIH PRHEKQMRPH QLAGFHFLVK NLVSDKPGGC ILAHAPGSGK TFMLISFIQS FLAKYPSGRP LVVLPKGILG TWKREFQQWQ VEDIPLYDLY
501: SVKTRAEQLE ILKSWEAKRS ILLVGYTQFS WIISSDEGGA VAAGCQERLL KVPNLLIMDE GHLPRTESTN VLESLQRVQT PRKVVLSGTL FQNHVSEVFN
601: IVNLVRPKFL KKDSSRPIVA RIMSQVSISG RRISKEDTDK FNESVEETLL HDGDFTRKVN VIRSLRELTK DVLHYYKGDI LDDLPGLVDF SVFLKLSPKQ
701: KEIVHKLEAY EKFKKNAVGT ALYMHPCLSE MSEVAAADRA SNLTDAAVDS LVQSINVADG VKARFFTNIL ALAESAGEKV LAFSQYLLPM KFLERLLVKT
801: RGWHVGKEMF VIRGDSKCTM EERELTVAQF NNSADAKVLF GSIKACGEGI SLVGASRVVI LDVHLNPSVT RQAIGRAFRP GQQKKVFVYR LVAADSPEEN
901: THKTAVKKEV IPKLWFEWSE QRCTSEGFQL NEIDIDDCGD ELLDNRAMRQ DIKALYAR
001: MDILQTDQAS SNGYYKNVHK RKQNQVDDGP EAKRVKSSAK VIDYSNPFAV SNMLEALDSG KFGSVSKELE EIADMRMDLV KRSIWLYPSL AYTVFEAEKT
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R
Arabidopsis Description
DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.