Factsheet for VIT_03s0038g04290.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	69.68	22.61
Os08t0289400-00	Rice	cytosol, nucleus	49.77	20.83
Bra000888.1-P	Field mustard	cytosol	40.27	19.39
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	52.49	17.26
VIT_03s0038g00030.t01	Wine grape	nucleus	73.3	17.03
TraesCS2D01G143100.1	Wheat	cytosol	44.34	15.81
Os08t0243866-00	Rice	endoplasmic reticulum	44.34	15.17
KRH27453	Soybean	cytosol	59.73	14.95
KRH20806	Soybean	cytosol	61.09	14.17
AT2G16390.2	Thale cress	nucleus	56.56	14.03
Bra021841.1-P	Field mustard	cytosol	45.7	13.22
Solyc01g109970.2.1	Tomato	extracellular	53.39	13.01
PGSC0003DMT400079488	Potato	nucleus	53.85	12.86
Os06t0255700-01	Rice	cytosol	52.49	12.26
TraesCS2B01G208700.1	Wheat	cytosol	50.23	12.12
CDX89710	Canola	nucleus	46.61	11.92
TraesCS5D01G344400.1	Wheat	nucleus	51.13	11.8
TraesCS5A01G340400.1	Wheat	nucleus	51.13	11.8
TraesCS2D01G189900.1	Wheat	nucleus	50.23	11.66
Zm00001d024677_P003	Maize	cytosol	49.32	11.47
KXG24379	Sorghum	cytosol	50.23	11.44
HORVU5Hr1G085320.1	Barley	plastid	49.77	11.28
HORVU2Hr1G034330.2	Barley	mitochondrion, nucleus, plastid	49.77	11.28
Zm00001d049605_P037	Maize	cytosol	49.32	11.16
EER92800	Sorghum	nucleus, plastid	47.06	11.01
TraesCS2A01G140400.2	Wheat	cytosol	47.51	10.98
TraesCS2B01G164300.3	Wheat	nucleus	47.06	10.88
GSMUA_Achr6P04530_001	Banana	nucleus	43.44	10.82
TraesCS2A01G182200.1	Wheat	plastid	50.23	10.68
TraesCS4B01G280600.1	Wheat	nucleus	45.7	10.58
TraesCS4D01G279200.1	Wheat	cytosol	45.25	10.52
Os03t0165266-00	Rice	nucleus	49.77	10.24
TraesCS4A01G022800.1	Wheat	mitochondrion, plastid	46.15	10.24
HORVU4Hr1G074230.3	Barley	nucleus, plastid	44.34	9.55
VIT_02s0012g00110.t01	Wine grape	cytosol	23.98	8.22
VIT_13s0067g01950.t01	Wine grape	nucleus	26.24	4.57
VIT_12s0028g03440.t01	Wine grape	plastid	15.38	3.89
VIT_03s0063g00580.t01	Wine grape	nucleus	15.38	3.48
VIT_04s0044g01680.t01	Wine grape	cytosol	15.84	3.36
VIT_14s0036g01460.t01	Wine grape	nucleus	18.1	2.71
VIT_07s0005g03670.t01	Wine grape	nucleus	12.67	2.28
HORVU2Hr1G024970.1	Barley	nucleus	2.71	1.83
VIT_15s0024g00350.t01	Wine grape	mitochondrion	13.57	1.48

Protein Annotations

ArrayExpress:VIT_03s0038g04290	EMBL:FN596508	EnsemblPlants:VIT_03s0038g04290.t01	EnsemblPlantsGene:VIT_03s0038g04290	Gene3D:3.40.50.10810	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:IPR038718	InterPro:P-loop_NTPase	InterPro:SNF2-like_sf
InterPro:SNF2_N	PANTHER:PTHR10799	PANTHER:PTHR10799:SF807	PFAM:PF00176	ProteinID:CCB60498	ProteinID:CCB60498.1
SUPFAM:SSF52540	UniParc:UPI000210972F	UniProt:F6I0N2	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3:-:3117228..3121748

Molecular Weight (calculated)

25239.5 Da

IEP (calculated)

9.480

GRAVY (calculated)

-0.337

Length

221 amino acids

Sequence
(BLAST)

001: MRIHVQENNE RSLRLILKKV KRSKSHIHEH CYTKDGKPTD DHSDGLRFSE NDSSVTVIHA HPRHGRQMKP HQVEGFNFLV SNLVADDPGG CILANAPGSG
101: KTFMIISFMQ SFLTKHPEVR SLVVLPKSIL ATWKKEFLTW QVEDIPLYDF YSVKADRPSQ QLDVLKQWVV EKSILFLGHT QFTAIVSGDG ASEAELTCQE
201: VLLKTRRFLF WMKITLQGPS K

Best Arabidopsis Sequence Match ( AT2G16390.2 )
(BLAST)

001: MDILQTDQAS SNGYYKNVHK RKQNQVDDGP EAKRVKSSAK VIDYSNPFAV SNMLEALDSG KFGSVSKELE EIADMRMDLV KRSIWLYPSL AYTVFEAEKT
101: MDNQQVVEGV INLDDDDDDD TDVEKKALCV VPSSSEIVLL DSDDEDNERQ RPMYQFQSTL VQHQKNQGDV TPLIPQCSFE EVDLGRGKEM PSAIKAIVEG
201: QTSRGKVLPI ENGVVNEKGV YVGVEEDDSD NESEAADEDL GNIWNEMALS IECSKDVARE TSHKEKADVV EDCEHSFILK DDMGYVCRVC GVIEKSILEI
301: IDVQFTKAKR NTRTYASETR TKRFGESDNE LKFSEEGLMI GGLAAHPTHA AEMKPHQIEG FQFLCSNLVA DDPGGCIMAH APGSGKTFMI ISFMQSFLAK
401: YPQAKPLVVL PKGILPTWKK EFVRWQVEDI PLLDFYSAKA ENRAQQLSIL KQWMEKKSIL FLGYQQFSTI VCDDTTDSLS CQEILLKVPS ILILDEGHTP
501: RNEDTNLLQS LAQVQTPRKV VLSGTLYQNH VKEVFNILNL VRPKFLKLDT SKSAVKRILA YTPCDVRGRL TGSNSDMASM FNETVEHTLQ KSEDFTVKIK
601: VIQDLREMTK KVLHYYKGDF LDELPGLADF TVVLNLSPKQ LNEVKKLRRE KRKFKVSAVG SAIYLHPKLK VFSDKSDDVS DTTMDEMVEK LDLNEGVKAK
701: FFLNLINLCD SAGEKLLVFS QYLIPLKFLE RLAALAKGWK LGKEVFVLTG NTSSEQREWS METFNSSPDA KIFFGSIKAC GEGISLVGAS RILILDVPLN
801: PSVTRQAIGR AFRPGQKKMV HAYRLIAGSS PEEEDHNTCF KKEVISKMWF EWNEYCGYQN FEVETIDVDE AGDTFLESPA LREDIRVLYK R

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.