Factsheet for VIT_03s0038g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g08480.t01	Wine grape	mitochondrion, plastid	61.51	85.9
VIT_03s0038g04290.t01	Wine grape	nucleus	17.03	73.3
KRH27453	Soybean	cytosol	57.62	62.06
Os07t0434500-01	Rice	cytoskeleton, cytosol, nucleus	41.32	58.48
KRH20806	Soybean	cytosol	55.52	55.4
AT2G16390.2	Thale cress	nucleus	50.68	54.1
Solyc01g109970.2.1	Tomato	extracellular	51.0	53.47
CDX89710	Canola	nucleus	48.16	53.01
PGSC0003DMT400079488	Potato	nucleus	50.68	52.11
Bra021841.1-P	Field mustard	cytosol	40.06	49.87
HORVU2Hr1G024970.1	Barley	nucleus	16.82	48.93
Os08t0243866-00	Rice	endoplasmic reticulum	33.12	48.76
Os06t0255700-01	Rice	cytosol	44.69	44.93
TraesCS2B01G208700.1	Wheat	cytosol	42.8	44.43
TraesCS5A01G340400.1	Wheat	nucleus	43.22	42.9
GSMUA_Achr6P04530_001	Banana	nucleus	39.85	42.73
TraesCS5D01G344400.1	Wheat	nucleus	43.01	42.69
TraesCS2D01G189900.1	Wheat	nucleus	42.59	42.54
Zm00001d024677_P003	Maize	cytosol	42.06	42.11
HORVU5Hr1G085320.1	Barley	plastid	43.01	41.95
HORVU2Hr1G034330.2	Barley	mitochondrion, nucleus, plastid	42.9	41.85
KXG24379	Sorghum	cytosol	42.17	41.34
Zm00001d049605_P037	Maize	cytosol	42.17	41.04
TraesCS4D01G279200.1	Wheat	cytosol	40.9	40.9
TraesCS2B01G164300.3	Wheat	nucleus	41.01	40.8
TraesCS2A01G140400.2	Wheat	cytosol	40.9	40.69
EER92800	Sorghum	nucleus, plastid	40.38	40.63
TraesCS4B01G280600.1	Wheat	nucleus	40.69	40.52
Bra000888.1-P	Field mustard	cytosol	19.45	40.3
TraesCS2A01G182200.1	Wheat	plastid	43.01	39.36
TraesCS4A01G022800.1	Wheat	mitochondrion, plastid	40.69	38.86
HORVU4Hr1G074230.3	Barley	nucleus, plastid	39.96	37.04
Os03t0165266-00	Rice	nucleus	41.64	36.87
Os08t0289400-00	Rice	cytosol, nucleus	20.29	36.55
TraesCS2D01G143100.1	Wheat	cytosol	22.08	33.87
VIT_02s0012g00110.t01	Wine grape	cytosol	19.77	29.15
VIT_13s0067g01950.t01	Wine grape	nucleus	21.56	16.15
VIT_12s0028g03440.t01	Wine grape	plastid	12.93	14.07
VIT_04s0044g01680.t01	Wine grape	cytosol	13.67	12.46
VIT_03s0063g00580.t01	Wine grape	nucleus	11.78	11.45
VIT_14s0036g01460.t01	Wine grape	nucleus	16.09	10.36
VIT_07s0005g03670.t01	Wine grape	nucleus	12.2	9.45
VIT_15s0024g00350.t01	Wine grape	mitochondrion	12.41	5.84

Protein Annotations

EntrezGene:100248561	wikigene:100248561	MapMan:12.4.1.3.3	MapMan:12.5.1.14.1	Gene3D:3.40.50.10810	Gene3D:3.40.50.300
ProteinID:CCB60727	ProteinID:CCB60727.1	UniProt:F6I1B1	EMBL:FN596508	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016301	GO:GO:0016491	GO:GO:0016740	GO:GO:0019538	GO:GO:0055114	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR038718	EntrezGene:LOC100248561	wikigene:LOC100248561
InterPro:P-loop_NTPase	PFAM:PF00176	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR10799
PANTHER:PTHR10799:SF807	SMART:SM00487	SMART:SM00490	InterPro:SNF2-like_sf	InterPro:SNF2_N	SUPFAM:SSF52540
UniParc:UPI000210AA8B	ArrayExpress:VIT_03s0038g00030	EnsemblPlantsGene:VIT_03s0038g00030	EnsemblPlants:VIT_03s0038g00030.t01	RefSeq:XP_002273814	RefSeq:XP_002273814.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:26344..40565

Molecular Weight (calculated)

107833.0 Da

IEP (calculated)

6.740

GRAVY (calculated)

-0.381

Length

951 amino acids

Sequence
(BLAST)

001: MEPTNGGLSS NYGNPIPVNF EPYKLTEFNS TKHKRIWTFE ENMHSEPKQK RQKAGPNVVD YSDPFAIPNL LEGLDAGRFG SVTKEIEALC ARRMQMLQPY
101: YVMYPSLSYM CTDLGKKQGK KASKLVNREA SHLAHEDVID LEDDHVVDDA LTATAVEDAT LPVVIIDSDD EDCGDQKVSH PPQETAWPSF SYQEVVLRKP
201: SVGLLANNPV VRDYVGSIAP KVEEGSLMGA TEIRKDKDVY IGVGEKSLVA NLEMKKVQGE YVGVEDDMET NEGNLRAKTE DDGLADMWQE FDLALQSSKD
301: VAVDPGEDEK ESKEECEHSF VLKDDIGSVC RICGVVNKSI ETIIEYQYTK VKRSRTYMYE PRNTKDREPT DDPSDGLGFS EHNLTVTEIH AHPRHSMQMK
401: PHQVEGFNFL VSNLVAENPG GCILAHAPGS GKTFMIISFM QSFLAKYPQA RPLVVLPKGI LATWKKEFLT WQVEDIPLYD FYSVKADSRP QQLEVLKQWV
501: AEKSILFLGY KQFSSIVCGD GASKATIACQ EILLKAPQIL ILDEGHTPRN ENTDVLYSLA KVQTPRKVVL SGTLYQNHVK EVFNILNLVR PKFLKLESSR
601: AVVKRIMSKV DIMGVRKQLK SNAADAFYDL VENTLQKDDN FRRKITVIQD LREMTSKVLH YYKGDFLDEL PGLVDFTVLL NLSARQKKEV GNLNKFERKF
701: KKNSVGSAVY LHPQLKYFAE KLAANESKTD EMTCQKKMDE ILEQLDVRDG VKAKFFLNVL ALCQSSGEKL LVFSQYLLPL RFLEKLTMKV KGWSPGKEIF
801: AISGESSSEQ REWSMERFNT SPDARVFFGS IKACGEGISL VGASRVLILD VHLNPSVTRQ AIGRAFRPGQ KKKVHVYKLV AADSPEEEDH NSCFKKELIS
901: KMWFEWNEYN SFVQKVTLTH LPKRLVRRWR QGISHLCFFF FIPYESICLI L

Best Arabidopsis Sequence Match ( AT2G16390.1 )
(BLAST)

001: MGFVYIVMTG YYKNVHKRKQ NQVDDGPEAK RVKSSAKVID YSNPFAVSNM LEALDSGKFG SVSKELEEIA DMRMDLVKRS IWLYPSLAYT VFEAEKTMDN
101: QQVVEGVINL DDDDDDDTDV EKKALCVVPS SSEIVLLDSD DEDNERQRPM YQFQSTLVQH QKNQGDVTPL IPQCSFEEVD LGRGKEMPSA IKAIVEGQTS
201: RGKVLPIENG VVNEKGVYVG VEEDDSDNES EAADEDLGNI WNEMALSIEC SKDVARETSH KEKADVVEDC EHSFILKDDM GYVCRVCGVI EKSILEIIDV
301: QFTKAKRNTR TYASETRTKR FGESDNELKF SEEGLMIGGL AAHPTHAAEM KPHQIEGFQF LCSNLVADDP GGCIMAHAPG SGKTFMIISF MQSFLAKYPQ
401: AKPLVVLPKG ILPTWKKEFV RWQVEDIPLL DFYSAKAENR AQQLSILKQW MEKKSILFLG YQQFSTIVCD DTTDSLSCQE ILLKVPSILI LDEGHTPRNE
501: DTNLLQSLAQ VQTPRKVVLS GTLYQNHVKE VFNILNLVRP KFLKLDTSKS AVKRILAYTP CDVRGRLTGS NSDMASMFNE TVEHTLQKSE DFTVKIKVIQ
601: DLREMTKKVL HYYKGDFLDE LPGLADFTVV LNLSPKQLNE VKKLRREKRK FKVSAVGSAI YLHPKLKVFS DKSDDVSDTT MDEMVEKLDL NEGVKAKFFL
701: NLINLCDSAG EKLLVFSQYL IPLKFLERLA ALAKGWKLGK EVFVLTGNTS SEQREWSMET FNSSPDAKIF FGSIKACGEG ISLVGASRIL ILDVPLNPSV
801: TRQAIGRAFR PGQKKMVHAY RLIAGSSPEE EDHNTCFKKE VISKMWFEWN EYCGYQNFEV ETIDVDEAGD TFLESPALRE DIRVLYKR

Arabidopsis Description

DRD1SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.